Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05375 and BL03377
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_05375___fliS.1.5803.seq
# -bsequence dna-align/BL03377___fliS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05375___fliS-BL03377___fliS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05375___fliS-BL03377___fliS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05375___fliS
# 2: BL03377___fliS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 408
# Identity: 296/408 (72.5%)
# Similarity: 296/408 (72.5%)
# Gaps: 12/408 ( 2.9%)
# Score: 1017.0
#
#
#=======================================
BSNT_05375___ 1 ATGGCGATCCAAAATCCATATACAGCCTATCAGCAAAATTCAGTGAATAC 50
|||||..|..|.|||||.|||.||||.|||||||||||||||.|.||.|.
BL03377___fli 1 ATGGCTTTAAACAATCCGTATGCAGCTTATCAGCAAAATTCAATCAACAT 50
BSNT_05375___ 51 GGCTACACCCGGGGAGCTGACGCTTATGCTGTATAATGGCTGTTTAAAAT 100
|||.||.||.||.||..|||||||||||||.|.|.|.|||||..|.||||
BL03377___fli 51 GGCGACTCCTGGAGAATTGACGCTTATGCTATTTGACGGCTGCCTTAAAT 100
BSNT_05375___ 101 TTAT-AAGACTTGCCTCTCAGGCCATTGAGAATGATGATATGG-AACGTA 148
|||| ||| ||.||....|||||.|||||..|.||.||||||| |||| |
BL03377___fli 101 TTATGAAG-CTGGCGAAACAGGCGATTGAACAAGAGGATATGGAAACG-A 148
BSNT_05375___ 149 AAAATGAGAATCTGATTAAAGCGCAAAATATTATTCAGGAATTAAATTTT 198
|||||..|||.||..|.|||||.|||||.|||||.|||||..|.|||.|.
BL03377___fli 149 AAAATACGAACCTTGTCAAAGCTCAAAACATTATACAGGAGCTCAATATC 198
BSNT_05375___ 199 ACACTTAACCGTAACATAGAGCTTTCCGCTTCCATGGGTGCGATGTACGA 248
||.|||.|.||.||..|.||..|..|||||||.|||||.|||||||||||
BL03377___fli 199 ACCCTTGATCGGAAAGTCGAATTGGCCGCTTCGATGGGGGCGATGTACGA 248
BSNT_05375___ 249 TTATATGTATCG----AAGATTGGTACAGGCAAATATCAAAAATGATACG 294
.|||||..|.|| ..||||| |.|||||.||.||.|||||.|..
BL03377___fli 249 GTATATCCACCGCCGCCTGATTG----AAGCAAACATTAACAATGACAAA 294
BSNT_05375___ 295 GGCATGCTGGCTGAGGTTGAAGGCTATGTAACAGATTTTCGCGATGCTTG 344
|..||..||||.||.||.|||||.|||||.|.||||||.||||||||.||
BL03377___fli 295 GATATCGTGGCGGAAGTCGAAGGGTATGTCAAAGATTTACGCGATGCCTG 344
BSNT_05375___ 345 GAAACAGGCCATTCAAAGTGAACGGAAGGACCGGCACGGATCAGGCGGGA 394
|||.|||||..||||||.|||||||.|||.||||..||||||.|||||..
BL03377___fli 345 GAAGCAGGCGCTTCAAATTGAACGGCAGGGCCGGTTCGGATCGGGCGGAC 394
BSNT_05375___ 395 TCGCATGA 402
|.||||.|
BL03377___fli 395 TGGCATAA 402
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