Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03241 and BL03306
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_03241___ypmS.1.5803.seq
# -bsequence dna-align/BL03306___ypmS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03241___ypmS-BL03306___ypmS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03241___ypmS-BL03306___ypmS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03241___ypmS
# 2: BL03306___ypmS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity: 387/613 (63.1%)
# Similarity: 387/613 (63.1%)
# Gaps: 89/613 (14.5%)
# Score: 1067.0
#
#
#=======================================
BSNT_03241___ 1 ATGAATAAGTGGAAGCGACTGTTTTTTATATT-GCTTGCAATCAATTTTA 49
|||||.||.||||||.|..|.|||||.||.|| || .|||.||||..|.|
BL03306___ypm 1 ATGAAGAAATGGAAGAGCTTATTTTTAATTTTAGC-AGCAGTCAACGTCA 49
BSNT_03241___ 50 T----CCTCGCCGCCGGGTTTGTGGCA--CTTGTTTTGCT-CCCGGGGGA 92
| |.| ||||||.||.| || ||..|||..|| |||||.|||
BL03306___ypm 50 TGATACTT----GCCGGGATTTT--CATTCTCATTTCCCTGCCCGGCGGA 93
BSNT_03241___ 93 ACAGGCTCAGGTGAAGGA---------TTCATCTGAGAGCGAGTATGGAT 133
..| ||||| |.|..||..||||||.|||..||
BL03306___ypm 94 CAA----------AAGGAGCCGCCGCGTCCGACTCCGAGCGAATATCAAT 133
BSNT_03241___ 134 TTCAAGTGACAAGCACAAAAGAATCATTAGCTGCGTTTGTTAACTCATAT 183
|..|.|||||.|||||.|||||.|||||.||.||.||..|.|||.|.||.
BL03306___ypm 134 TGAACGTGACGAGCACGAAAGATTCATTGGCCGCATTCATCAACACGTAC 183
BSNT_03241___ 184 TT---AAACGA--CAAAGCATCAAACAAGCTTGATTATAAAGTAGAGATT 228
|| |||.|| |...||.| .|.|||||.|||.||.|.||.||.
BL03306___ypm 184 TTGGAAAAGGAGTCTTCGCCT-----GATCTTGACTATCAAATCGAAATC 228
BSNT_03241___ 229 GATGATGATGTTCATGTCGCAGGGAAAATCAAGGCATTTTCCACGTCTAT 278
||||||||..|.|||.|||..||....|||...||.||||||.||.|..|
BL03306___ypm 229 GATGATGAATTCCATATCGTCGGTGCGATCCGCGCCTTTTCCTCGACAGT 278
BSNT_03241___ 279 TGATGC--GTTTATCGCTTTTGAGCCGACTGTGAAAAAAAACGGTGATGT 326
.||||| |..|.|| ||||.| ||||||.|||.||||||||||.||.||
BL03306___ypm 279 CGATGCGAGGGTGTC-CTTTCG-GCCGACGGTGGAAAAAAACGGAGACGT 326
BSNT_03241___ 327 AGAGCTGAATGTCACGAAATTTTCGTTAGGGAAATTGAGTATACCAATTA 376
.|..||..|.||.||||.|||||||.|.||.||.||||.|.|.||.| ||
BL03306___ypm 327 GGTCCTTGACGTGACGAGATTTTCGATCGGCAAGTTGAATGTTCCGA-TA 375
BSNT_03241___ 377 GC-TTTGTGTTAAATTATATGGA-CAGCTTTTATGAATTGCCGTC----A 420
.| .|.|||.|.||.||.||||| || .|||||||| ||.|| .
BL03306___ypm 376 TCGATGGTGCTCAACTACATGGATCA-ATTTTATGA----CCTTCCTGAT 420
BSNT_03241___ 421 TTTGTCCATGTTC------ACCCCGGAGAAAAAAGCATTGAAGTGCGTTT 464
|||||.||.|||| ||.|...|||| |||.||||.|||.|
BL03306___ypm 421 TTTGTACACGTTCGTTCAGACGCTAAAGAA------ATTCAAGTTCGTCT 464
BSNT_03241___ 465 GTCAGAAATGC--CTTTAACGAATGGAATGTATGTCAAAGCGGATAAG-- 510
||||||.|||| |||.|| ||.|||||||||||.||||| |.|||
BL03306___ypm 465 GTCAGAGATGCCGCTTAAA--AACGGAATGTATGTGAAAGC--AAAAGAC 510
BSNT_03241___ 511 ATAAATTTAGAAAAAGATGAAATTGAGTTTTCCTATTACCATCCT----A 556
||..||||||||||||||.||||.||.|||...||||||.|.||| |
BL03306___ypm 511 ATTGATTTAGAAAAAGATCAAATCGAATTTGTTTATTACAAGCCTGCACA 560
BSNT_03241___ 557 AACA-----ATAG 564
|||| |||.
BL03306___ypm 561 AACAGATTCATAA 573
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