Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00196 and BL03272
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_00196___yacP.1.5803.seq
# -bsequence dna-align/BL03272___yacP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00196___yacP-BL03272___yacP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00196___yacP-BL03272___yacP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00196___yacP
# 2: BL03272___yacP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 515
# Identity: 320/515 (62.1%)
# Similarity: 320/515 (62.1%)
# Gaps: 100/515 (19.4%)
# Score: 1180.0
#
#
#=======================================
BSNT_00196___ 1 ATGGATATCCTGTTAGTAGACGGGTACAACATGATTGGAGCCTGGCCGCA 50
BL03272___yac 0 -------------------------------------------------- 0
BSNT_00196___ 51 GCTGAAGGATTTAAAAGCGAACAGTTTTGAAGAGGCGAGAGACGTACTGA 100
.|||
BL03272___yac 1 ----------------------------------------------TTGA 4
BSNT_00196___ 101 TTCAGAAAATGGCGGAATATCAATCGTATACAGGAAACAGGGTTATTGTT 150
|||||||.||||||||||||||||||||||||||.....||||.||.|||
BL03272___yac 5 TTCAGAAGATGGCGGAATATCAATCGTATACAGGGTTTCGGGTAATCGTT 54
BSNT_00196___ 151 GTTTTTGACGCGCATCTCGTAAAAGGGCTTGAGAAAAAACAGACCAACCA 200
||.|||||.|||||||||||.|||||..|.||||||||..||..|||.||
BL03272___yac 55 GTCTTTGATGCGCATCTCGTTAAAGGAATCGAGAAAAAGAAGGTCAATCA 104
BSNT_00196___ 201 TAGAGTTGAAGTAATTTTTACAAAAGAAAATGAGACGGCTGATGAGCGGA 250
|.|.||.|||||.||.||.||||..||||||||.|||||||||||.||||
BL03272___yac 105 TCGCGTAGAAGTGATATTCACAAGGGAAAATGAAACGGCTGATGAACGGA 154
BSNT_00196___ 251 TAGAAAAGCTCG-CTCAGGCTTTGAATAATATTGCGACTCAAATTCACGT 299
|.||.||.||.| .||||.| |||||||.||||..|||.||.||.||.||
BL03272___yac 155 TCGAGAAACTGGTGTCAGAC-TTGAATAGTATTCAGACGCAGATCCATGT 203
BSNT_00196___ 300 TGCGACCTCTGACTATACTGAGCAGTGGGCGATTTTCGGACAGGGGGCAT 349
|||.||.||.||.||.||.|||||||||||||||||.||.||||||||..
BL03272___yac 204 TGCCACATCCGATTACACAGAGCAGTGGGCGATTTTTGGCCAGGGGGCCC 253
BSNT_00196___ 350 TGCGGAAATCGGCCCGGGAGCTTTTGAGAGAGGTAGAAACGATTGAAAGG 399
||||.|||||||||.|.|||||..|.||.|||||.|||.||||.||||||
BL03272___yac 254 TGCGCAAATCGGCCAGAGAGCTGCTCAGGGAGGTCGAAGCGATCGAAAGG 303
BSNT_00196___ 400 CGAATAGAGAGAC-GGGTAAGAAAAATCACTTCCGAAAAGCCGGCGGGTA 448
|.|||.|| |.|| ||||.|.|.|||||||.||.||....||.||.||.|
BL03272___yac 304 CAAATTGA-AAACAGGGTGAAACAAATCACCTCAGAGCGTCCCGCAGGGA 352
BSNT_00196___ 449 AAATTGCTTTATCGGAAGAGGTTTTGAAAACGTTTGAAAAGTGGAGGCGG 498
|||||.|.||.||.|||||.||.||||..|..||.|||||.|||.||||.
BL03272___yac 353 AAATTCCATTGTCAGAAGACGTCTTGAGGATCTTCGAAAAATGGCGGCGT 402
BSNT_00196___ 499 GGAGACTTAGATTAA 513
||.|||||.|||||.
BL03272___yac 403 GGCGACTTGGATTAG 417
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