Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01324 and BL03113
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_01324___yfkF.1.5803.seq
# -bsequence dna-align/BL03113___yfkF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01324___yfkF-BL03113___yfkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01324___yfkF-BL03113___yfkF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01324___yfkF
# 2: BL03113___yfkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1256
# Identity: 840/1256 (66.9%)
# Similarity: 840/1256 (66.9%)
# Gaps: 157/1256 (12.5%)
# Score: 2715.5
#
#
#=======================================
BSNT_01324___ 1 ATGTCACGATTTCATTTCTTTATCCTTGTCTTGCTCGTATCCATTTCCGG 50
|||.|..|||||||.||.||.||.||.||.|||.|.||....||.||.||
BL03113___yfk 1 ATGACTAGATTTCACTTTTTCATTCTCGTTTTGATTGTCAGTATATCAGG 50
BSNT_01324___ 51 GTTTTCACAAGGCATGCTGCTGCCTGTCATTTCAATCATTTTTGAAACA- 99
.|||||.|||||.|||||.||.||.|||||.||..|.|||||.| ||||
BL03113___yfk 51 TTTTTCGCAAGGGATGCTCCTTCCGGTCATCTCTGTTATTTTCG-AACAG 99
BSNT_01324___ 100 -AATGGAGAATCCGCTGCTATCAACGGCCTGCACGCGACCGGGCTGTATA 148
|| ||..|.||.|||||..|.|||||.||.||.|||||.||.||.||.|
BL03113___yfk 100 GAA-GGCCATTCGGCTGCACTGAACGGGCTTCATGCGACAGGCCTCTACA 148
BSNT_01324___ 149 TCGGTGTGCTTTTGGCTTCGCCGTTTATGGAAGCGCCGCTCAGAAAGCTC 198
||||.||.||..|.||||||||.||.||||||||.|||||..|.|.||||
BL03113___yfk 149 TCGGCGTCCTGATCGCTTCGCCTTTCATGGAAGCACCGCTTCGCAGGCTC 198
BSNT_01324___ 199 GGGTTCAAGCCGCTGATCGTCATGGGCGGAAGCATTGTCATTTT------ 242
||.||.||.||||||||.|||||.||||| .||.||..|
BL03113___yfk 199 GGTTTTAAACCGCTGATTGTCATCGGCGG------GGTGATGGTGTGCGC 242
BSNT_01324___ 243 AAGCTTATTCGGATTTATTTGGCTTCAGTCAGTTT-GGGTCTGGTTCCTG 291
.||.||.||||..|||.|||...||||||| |||| ..||.||||||.|.
BL03113___yfk 243 GAGTTTGTTCGCCTTTGTTTTTATTCAGTC-GTTTATCGTTTGGTTCTTT 291
BSNT_01324___ 292 CTTCGCCTGTTCATTGGAATCGGCGACCACATGCTTCACTTTTCTACGCA 341
.|.||.||.||.||.||||||||.||.||.|||||.||||||||.|||||
BL03113___yfk 292 TTGCGGCTCTTGATCGGAATCGGGGATCATATGCTGCACTTTTCAACGCA 341
BSNT_01324___ 342 AACGTGGGTGACCTCCATGTCATCAAAACAAAATCGCGGAAGAAACCTGT 391
|||.|||||||||.|..|.||.||..||.||||.|||||..|.||..|.|
BL03113___yfk 342 AACTTGGGTGACCACATTATCGTCTGAAAAAAAACGCGGCCGCAATATCT 391
BSNT_01324___ 392 CTATTTACGGGCTTTCCTTTGGCCTTGGCTTTGCCGCAGGCCCGTTCATG 441
||.|.|||||.|||||.|||||..|.||.|||||.||.||.||.||..|.
BL03113___yfk 392 CTTTGTACGGCCTTTCGTTTGGTTTGGGATTTGCAGCCGGGCCTTTTTTA 441
BSNT_01324___ 442 GTGCCGCTTGTCAAGCTGAGTCCGTCGC--------TTCCTTTTATCGTG 483
..|||||||||||| |.|||| |.||.||||||||.
BL03113___yfk 442 ACGCCGCTTGTCAA--------CATCGCCCCATCATTGCCGTTTATCGTC 483
BSNT_01324___ 484 TCCGGCTGC-ATCAGTCTGTTTGCGTGGCTTTTTGTTTTCTTTCTACAAA 532
||.|| ||| .||||.|||.|.||.|||||.|||.||||.|..||.||||
BL03113___yfk 484 TCAGG-TGCGTTCAGCCTGCTGGCATGGCTGTTTATTTTTTGCCTGCAAA 532
BSNT_01324___ 533 ATGCATACCC---GGAAACCAGTCCTCATGAAA-CCAAATCAGACAATAG 578
|.|..|.||| |.|||.|.| ||| ||||| ||..|.| ||.||.||
BL03113___yfk 533 ACGATTTCCCTGAGAAAAGCGG--CTC-TGAAAGCCGCAGC-GATAACAG 578
BSNT_01324___ 579 TTTCAGGCGATTTTATCAGGCCATGCTGTTTGGGTGGGTTGCCTTTATGC 628
.||.|.|||.||...|||.|||.|.|||.||||||||||.||.|||.|||
BL03113___yfk 579 CTTGAAGCGTTTCGCTCAAGCCTTCCTGCTTGGGTGGGTCGCGTTTTTGC 628
BSNT_01324___ 629 CTACATTTGGCTATGGCTTTTTGGAAACGGCGCTGAACGGAAGCTTTCCG 678
|.|||||.|||||.||||||||||||||.||.||||||||.|..|||||.
BL03113___yfk 629 CGACATTCGGCTACGGCTTTTTGGAAACCGCCCTGAACGGCAATTTTCCC 678
BSNT_01324___ 679 GTGTACGCGCTCCGTTTGGGGATATCAGTAGACGCAGTAGCGATCATCCT 728
||.||.||||||||.|.|||.||.||.||.||.|..|||.|||||||.||
BL03113___yfk 679 GTCTATGCGCTCCGGTCGGGCATTTCCGTCGAAGGCGTATCGATCATTCT 728
BSNT_01324___ 729 TCCCGCATTTGCGATTGGAAGCATTATTTTTCAGTTTCCGCTCGGCATCC 778
|||.||.||||||||.||||||||..|.|||||||.||||||||||.|..
BL03113___yfk 729 TCCGGCTTTTGCGATCGGAAGCATCGTCTTTCAGTATCCGCTCGGCGTGT 778
BSNT_01324___ 779 TCAGCGATAAATACGGCAGGCGGAATGTGCTGCTGGTGAT-TTTACTGAC 827
|.|||||.||.|||||.|||||.|||||.||.||.||.|| ||..|||.|
BL03113___yfk 779 TGAGCGACAAGTACGGAAGGCGAAATGTACTCCTTGTCATATTGGCTGTC 828
BSNT_01324___ 828 TGGGGC--------TCTTTGCT------TTTTCATCG---CCGGTGTATT 860
||||| |||||||| ||||| || |||
BL03113___yfk 829 -GGGGCAGGCTGCTTCTTTGCTGCGGGCTTTTC--CGAATCCG------- 868
BSNT_01324___ 861 TCCTTCGCCTTACGTGATCGGCGGC-TGCTTTTTTATTGCGGGAATGGCA 909
|.||||..||| ||||| ||.|||||.||.||.||||||||.
BL03113___yfk 869 TTCTTCTGCTT---------GCGGCATGTTTTTTCATAGCCGGAATGGCT 909
BSNT_01324___ 910 GTCGGATCAACCTTTACACTTGGCATCAGCTATATGACAGATCTTCTTC- 958
||.||||||||.|||.||||.||||||||.|.||||.|.||.||.||||
BL03113___yfk 910 GTGGGATCAACTTTTTCACTCGGCATCAGTTTTATGGCCGACCTGCTTCC 959
BSNT_01324___ 959 ----CGCCTCATCTCCTGCCGGCGGGAAACCTGCTTTGCGGCATTACATT 1004
||||| |||| |||||.||.|||.||.|.|||||.||||||||
BL03113___yfk 960 AAAACGCCT--TCTC---CCGGCCGGGAACTTGATGTGCGGAATTACATT 1004
BSNT_01324___ 1005 CAGTCTCGGCAGCATCCTCGGTCCGGTTGCCGGCGGCTGGTATATGCAGA 1054
|||..||||.|||||..|||||||||||||.|||||.|||||||||||||
BL03113___yfk 1005 CAGCTTCGGAAGCATTTTCGGTCCGGTTGCAGGCGGGTGGTATATGCAGA 1054
BSNT_01324___ 1055 CATT---TGAAAGCGCAAACTTGTTCTACTTCATTACTCTCACGCTTAGC 1101
.||| |.|.||| |||.||||.||.||.|||| ||.|| |.
BL03113___yfk 1055 TATTCCATAACAGC---AACCTGTTTTATTTGATTA----CATGC---GT 1094
BSNT_01324___ 1102 GCT-GTGTGG--CTGG-CCCTTGTGC---TGGGCAAACCGAAAA------ 1138
|.| ||||.| |||| .|...|||| |.||||||.||||.|
BL03113___yfk 1095 GATGGTGTTGATCTGGATCGGGGTGCTCTTTGGCAAAACGAAGAAAAACG 1144
BSNT_01324___ 1139 GCTGGTCAC-------------CGGC-----TGAAACCTATTCTTCATCT 1170
|| |.||.| |||| ||.||
BL03113___yfk 1145 GC-GCTCTCGAACAATCTGAGGCGGCGCCAATGTAA-------------- 1179
BSNT_01324___ 1171 TCTTAA 1176
BL03113___yfk 1179 ------ 1179
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