Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01402 and BL03028
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_01402.1.5803.seq
# -bsequence dna-align/BL03028___yfiX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01402-BL03028___yfiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01402-BL03028___yfiX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01402
# 2: BL03028___yfiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2751
# Identity: 1754/2751 (63.8%)
# Similarity: 1754/2751 (63.8%)
# Gaps: 378/2751 (13.7%)
# Score: 5106.0
#
#
#=======================================
BSNT_01402 1 TTGCTGATTAAAAAGAATGCTTTATCAATATTAAAAATCGTTTTTCCTAT 50
||.|||||.|||||..|..|.||.||||..|||||..||||...
BL03028___yfi 1 ------ATGAAAAAAAATGCGCTGGCGATTTTAAGGATCGTGATTCCGGC 44
BSNT_01402 51 TGCTGTTTTGCTATTTGTTATTTATCAATCGAAAAAAGAACTGACAAATC 100
.||||||.|..|.|||||..|||.||||.||||||||||||||.|....|
BL03028___yfi 45 GGCTGTTCTTTTGTTTGTCTTTTTTCAAGCGAAAAAAGAACTGGCCGGGC 94
BSNT_01402 101 TGTCATTCAAACGTAC------GCTCATGGTCATCAACGGACTGGAA-CG 143
||||.||.|||...|| |.|.||.| ||||| |.| || ||
BL03028___yfi 95 TGTCTTTTAAAGAAACATTTTTGATTATCG--ATCAA---ATT--AATCG 137
BSNT_01402 144 AACTGACTTATTTATGCTTGTGTTGATCGG-CTTGCTGGC-TGTTGCGGC 191
.|.||||.||||.||.|||||.||..|||| |||||.|.| |.|| |||
BL03028___yfi 138 GATTGACCTATTCATCCTTGTTTTTCTCGGACTTGCCGCCATTTT--GGC 185
BSNT_01402 192 CATGTCGCTGTATGATTACGTCCTGAAATACTCAC-------------TT 228
.|||.|..|.||.||||..||.|||.....|||.| ||
BL03028___yfi 186 GATGACATTATACGATTTTGTTCTGGTCCGCTCCCTCGGAATGAAGGTTT 235
BSNT_01402 229 CGCCTATCGATCACAAACGGAAAAGTATTCAGGGTTTCCTGGATCGCCAA 278
|| |||.||||||..| |||..||.||.|||||||||||
BL03028___yfi 236 CG------------AAATGGAAAACGA-TCAAAGTATCATGGATCGCCAA 272
BSNT_01402 279 TTCATTTAATAATGTGCTGGGCTTCGGCGGTTTAGCCGGCGTCGGGTTAA 328
.|||.||||.|||||.||.||.||||||||.||..||||.|..||.||.|
BL03028___yfi 273 CTCACTTAACAATGTTCTCGGGTTCGGCGGATTGTCCGGTGCAGGATTGA 322
BSNT_01402 329 GAATGATGTTATATAAGGAGCAT----ACGA-------AAGACCATAAGG 367
|||.|||..|.||.||.|||||| |.|| |||...||.|||
BL03028___yfi 323 GAACGATCCTTTACAAAGAGCATGTTGATGATGTGAAGAAGCTGATCAGG 372
BSNT_01402 368 CACTCGTGAAAGGAATCGCCTGGCTCACATCATCTATGCTGCTCGGATTA 417
||.|||||.|||||..|.||.||..|.||.|||||..|.
BL03028___yfi 373 -----------GGGATCGCTTGGCTTGCGTCTTCGGTTCTTCTCGGGCTG 411
BSNT_01402 418 TCTGTTTTCAGCATTTTCGTCGCTGCGAGAGTGCTGCCAGTGGATGAAGT 467
|||||..|||||.||.|||||..|||..||.|.|||||.|..|..||..|
BL03028___yfi 412 TCTGTCCTCAGCCTTCTCGTCCTTGCCGGAATTCTGCCTGCCGGGGATCT 461
BSNT_01402 468 GATT-CATGAAAAGCCTTGGCTATGGGC----GGTCGTTATCGGTTTTGC 512
|.|| || |||||..|.||| |.|| ||..|||..||||...||
BL03028___yfi 462 GTTTACA-GAAAAAACGTGG----GTGCTGCTGGCTGTTGCCGGTACGGC 506
BSNT_01402 513 GCTGATATTGCCGCT----GTCTTTGGCGG-TGTCCAAAATAAAAGACCG 557
|.|||| |||| || |||| .||| |..|.||.||.|.
BL03028___yfi 507 GATGAT-----CGCTCCCGGT-----GCGGCCGTC--ATTTTAATGATCA 544
BSNT_01402 558 CAAAGCTGGGGACGAAGAGAATGCGGACAAAGTGAAAA----ATCCGATT 603
.||| |||||||| ||.||..|...||||| ||.||..|
BL03028___yfi 545 AAAA---------GAAGAGAA-GCAGAGGAGCCGAAAAGGGCATGCGGCT 584
BSNT_01402 604 TTCG----------CATATATTGGAGCTTCAGTTGTTGAATGGCTCATGG 643
|||| |.|||.|.||.||.||.||..|.||.||| .|.|
BL03028___yfi 585 TTCGGTCTTCTTTTCTTATCTGGGTGCATCGGTGATCGAGTGG---GTTG 631
BSNT_01402 644 CCG--GGATC-GTCATCTATT-TTGCTTTGTTC-GCTATGGGCATTCA-- 686
||| |.|.| |||||.|||| ||.|.||| | .|.||||||.|..|
BL03028___yfi 632 CCGCAGCAGCGGTCATGTATTATTCCCTTG--CAACGATGGGCGTCGAAT 679
BSNT_01402 687 TGCAGATA-------TCAGGTATGTGTTCGGGGTGTT--CGTCATTGCGG 727
||.|..|| ||| ||||.||.|| || |||||..
BL03028___yfi 680 TGGACTTAAAAACCGTCA---------TCGGCGTTTTTACG--ATTGCTT 718
BSNT_01402 728 CGATCGGAGGAATGATCAGCCTCGTGCCGGGCGGCTTCGGCTCGTTTGAC 777
||.|.|..|||||||||||.|||||.||.|||||.|||||.|||||.|||
BL03028___yfi 719 CGGTGGCCGGAATGATCAGTCTCGTTCCCGGCGGATTCGGTTCGTTCGAC 768
BSNT_01402 778 CTTTTATTTTTGCTGGGGATGGAG-CAGCTTGGCTATCATCAGGAGGCCA 826
||..|.||||||.|.||.|| ||| |||||.||...|.|||||||...||
BL03028___yfi 769 CTGCTTTTTTTGGTCGGAAT-GAGCCAGCTGGGGGTTGATCAGGAAATCA 817
BSNT_01402 827 -TCGTTACTTCTATTGTGTTGTACAGGCTCGCCTATTCATTTATCCCATT 875
|| |.||..|.||||||.|.|||.||.||||||||||.||||||||.||
BL03028___yfi 818 CTC-TGACGGCGATTGTGCTCTACCGGATCGCCTATTCGTTTATCCCTTT 866
BSNT_01402 876 TATCTTGGGACTGTTCTTTGCCGCAGGCGACCTGACGGAAAATACAATGA 925
|.|.||.||.||..|.|||||.||||.|||..||||.|.||||||.||||
BL03028___yfi 867 TGTGTTCGGTCTTATTTTTGCAGCAGCCGATTTGACTGGAAATACGATGA 916
BSNT_01402 926 AGCGGCTCGAAACGAACCCGCGCATCGCACCGGCAATTGAGACGACAAAC 975
||.||||||||...||.|||...||.||.||||||||.||.|||||.||.
BL03028___yfi 917 AGAGGCTCGAAGAAAAACCGATTATTGCCCCGGCAATAGAAACGACCAAT 966
BSNT_01402 976 GTTCTGCTTG-TTGTTCAGCGTGCGGTATTAGTGAGAATTTTGCAAGGCT 1024
.||||| ||| ||.|.||..|.|||.|..||.|.|||.|..||.|.||.|
BL03028___yfi 967 ATTCTG-TTGATTTTACACAGAGCGCTCCTATTCAGACTGCTGAACGGTT 1015
BSNT_01402 1025 CGCTTTCCCTTATTGTGTT------CGTAGCAGGTCTGATTGTCTTGGCC 1068
|||||||..|.||.|..|| ||.||| ||||||..|.||.
BL03028___yfi 1016 CGCTTTCAGTCATCGCATTTTGCAGCGGAGC------GATTGTGATCGCA 1059
BSNT_01402 1069 TCAGTTTCCTTGCCGATTGACAGGCTGACGGTTATACCGCACATTCCGCG 1118
||.||..|..||||||||||||||.|.||..|.||||||.|.|||
BL03028___yfi 1060 TCTGTGGCGCTGCCGATTGACAGGATTACATTGATACCGAATATT----- 1104
BSNT_01402 1119 CCCGGCGCTTTTGCTG------TTCAACGGCCTGTCCTTAAG-CTCAGCA 1161
.||..|.|..||||| ||.|||||..|||||.|.|| .||.||
BL03028___yfi 1105 -TCGAAGTTCATGCTGGTGTTTTTTAACGGTTTGTCCCTCAGTTTCGGC- 1152
BSNT_01402 1162 CTCATTCTGCTAATTTTGCCGATCGAGCTTTATAAACGGACAAAACGTTC 1211
.|.|||.||||.|||.|||||.|.||.||||||....|||||||..|.||
BL03028___yfi 1153 TTGATTTTGCTGATTCTGCCGCTTGAACTTTATCGGAGGACAAAGAGATC 1202
BSNT_01402 1212 CTA------CACGATGGCCATTACAGCGCTTGTCGGCGGCTTTGTGTTCA 1255
.|| .|||.||.||..|...|||||| |.||||.||||||
BL03028___yfi 1203 TTATTATATGACGCTGACCGCTTTGGCGCTT------GCCTTTCTGTTCA 1246
BSNT_01402 1256 -GCTTTTTAAAAGGGC-TTAACATCAGCGCGATATTCGTACTGCC---GA 1300
|||||||||| ||| ||||.||.|||||..|.|||.|..|.|| |.
BL03028___yfi 1247 CGCTTTTTAAA--GGCTTTAATATTAGCGCCGTCTTCATGATTCCTGTGG 1294
BSNT_01402 1301 TGATT------ATCGTATTGCT---TGTGCTATTGAAAAAACAATTTGTC 1341
||.|| .|.|||||||| .|.||..||.|.||
BL03028___yfi 1295 TGTTTGCCCTGTTTGTATTGCTGAGGGGGCAGTTTACAA----------- 1333
BSNT_01402 1342 CGCGAACAGGCATCCTATACACTGGGACAATTGATATTCGC-TGTGGCGC 1390
|.||.|.|||...|||.|||.|.||.|| |.|||| ||.||.||
BL03028___yfi 1334 -GGGAGCGGGCTGTCTACACATTCGGGCA------AATCGCATGGGGAGC 1376
BSNT_01402 1391 TGTTTACTGTGGCGCT---CTTT----AACTACAATCTGATCGCGGGCTT 1433
| |||| |.|..|.|| |||| ||.||||||.|.||||| |
BL03028___yfi 1377 T-TTTA-TCTTCCTCTTTACTTTATTGAATTACAATATTATCGC-----T 1419
BSNT_01402 1434 T-----ATTTGGGACCGGATGAAGAAGGTGCTGCGTC------------- 1465
| ||||||| |||.||| ||.|
BL03028___yfi 1420 TCACACATTTGGG------------AGGCGCT-CGGCCATCTTCTTGTGA 1456
BSNT_01402 1466 ACGAATATTTCGTCCACAG-------CACCTCGCATATTACACAT-GCAA 1507
|.||.||||||.|.||||| ||..||| ||.| ||.|
BL03028___yfi 1457 AAGATTATTTCATTCACAGTGAACGCCATGTCG--------ACTTCGCGA 1498
BSNT_01402 1508 CCATCATGGCGATCATCATT-GTGCCGCTGTTCTTCTTGATATTTACA-G 1555
|..|..|.||| |.||..|| ||.|||||||..||| |.|.|||.|| .
BL03028___yfi 1499 CGTTTTTTGCG-TTATTTTTCGTTCCGCTGTATTTC--GCTGTTTTCATC 1545
BSNT_01402 1556 TGGTC-TATCATAAGAGAACGAAACCGATCGG---AGAGCAAGCTGACCC 1601
|||.| |.|.|.|.||.|||||||..|||||| ||||| ||||.||
BL03028___yfi 1546 TGGGCGTTTAACAGGAAAACGAAAGAGATCGGTGAAGAGC---CTGATCC 1592
BSNT_01402 1602 TGAGCGTCTTGCTGCGTTTCTTA-ATGAAAAAGGCGGCAACGCGCTGAGC 1650
.|||...||.|..|| .|||||| |.|||||||||||||||||..|||||
BL03028___yfi 1593 GGAGAAACTGGAGGC-ATTCTTAGAAGAAAAAGGCGGCAACGCTTTGAGC 1641
BSNT_01402 1651 CATCTCGGTTTTCTTGGAGATAAGCGGTTTTATTTTTCCAGCGATGGGAA 1700
|||.|.||.|||.|.||.||.||||||||||.||.|||.|||||.|||||
BL03028___yfi 1642 CATTTAGGCTTTTTAGGGGACAAGCGGTTTTTTTATTCAAGCGACGGGAA 1691
BSNT_01402 1701 TGCACTGCTTCTGTTTGGGAAAATC-GCCAGAAGGCTGGTCGTGCTCGGC 1749
|||.|||.|||..||.|..|||.|| ||||| .|.||.||.|||||||||
BL03028___yfi 1692 TGCGCTGATTCAATTCGCCAAAGTCGGCCAG-CGCCTCGTTGTGCTCGGC 1740
BSNT_01402 1750 GATCCGTCTGGCCAAAGAGAATCATTCCCGCTCGTGCTGGAAGAATTTCT 1799
||.|||||.||||....|||.||.||.|||||||||.|..|||||||.||
BL03028___yfi 1741 GACCCGTCCGGCCGGGAAGACTCGTTTCCGCTCGTGATCAAAGAATTCCT 1790
BSNT_01402 1800 GAACGAAGCGCATCAGAAGGGATTCAGTGTTTTG-----TTCTATCAAAT 1844
..|.|..||..|.||.||.|| ||.|.||| ||||||||.||
BL03028___yfi 1791 TCATGCGGCTGACCAAAAAGG-----GTATCTTGTCATTTTCTATCAGAT 1835
BSNT_01402 1845 TGAACGAGAGGACATGGCGCTGTATCACGATTTTGGCTACAACTTCTTTA 1894
.|||||.||.|||||||||||.|||||.||.||.||.|||..|||.||.|
BL03028___yfi 1836 CGAACGCGAAGACATGGCGCTCTATCATGACTTCGGATACCGCTTTTTCA 1885
BSNT_01402 1895 AATTGGGCGAGGAAGC-ATATGTAGATTTAAATACATTTACCTTGACTGG 1943
|..|.||.||.||.|| || |||.||..|..|.||.||||| |.|..
BL03028___yfi 1886 AGCTTGGAGAAGAGGCGAT-TGTCGACCTTGACACCTTTAC----AATCA 1930
BSNT_01402 1944 GAAGAAAAAA----GCCGGCCTTCGGGCAATCAATAACCGCTTTGAGCGG 1989
|..||||||| |||||.||..||||.|||.|.|||||.|||||.|||
BL03028___yfi 1931 GCGGAAAAAAGCGGGCCGGACTAAGGGCGATCTACAACCGTTTTGAACGG 1980
BSNT_01402 1990 GAGGAGTATACTTTCCGTGTGGATCATCCCCCATTTTCTGATGCG--TTT 2037
||.|.||||||.||||.|||.||.||.||.||.||||| || |.| ||.
BL03028___yfi 1981 GAAGGGTATACGTTCCATGTCGAACAGCCGCCGTTTTC-GA-GAGAATTC 2028
BSNT_01402 2038 TTGGAGGAGCTGAAGCAAATCTCAGACGAATGGCTCGGCTCG-AAAAAAG 2086
.|..|.|||||||.|||..|.||.||.|||||||||||| || |||||||
BL03028___yfi 2029 CTCAACGAGCTGAGGCAGGTGTCTGATGAATGGCTCGGC-CGCAAAAAAG 2077
BSNT_01402 2087 AGAAGGGATTCTCGCTCGGATTTTTT------GATCCTTCCTATTTACAG 2130
|.||.||.||.||||||||.|||||| ||| |||||.||.
BL03028___yfi 2078 AAAAAGGCTTTTCGCTCGGGTTTTTTCAAGAAGAT------TATTTGCAA 2121
BSNT_01402 2131 AAAGCGCCGATCGCCTATATGAAAAATGCAGAAGGAGAGATCGTTGCATT 2180
||.|||||.||.|||..|.|.||||..|.||||||.||||||||.||.||
BL03028___yfi 2122 AAGGCGCCAATTGCCGTTTTAAAAAGCGAAGAAGGCGAGATCGTCGCGTT 2171
BSNT_01402 2181 CGCAAATGTCATGCCGATGTACCAGGAAGGAGAGATATCGGTCGATCTGA 2230
....|||.|||||||||||||||..|||||.||.|||||..|||||||||
BL03028___yfi 2172 TATGAATATCATGCCGATGTACCGCGAAGGGGAAATATCCATCGATCTGA 2221
BSNT_01402 2231 TGCGCTA-TCG----CGGCGACGCTCCAAATGGCATTATGGACGCATTGT 2275
||||||| ||| .|||| ||.||.||.||.|||||.||..|||
BL03028___yfi 2222 TGCGCTATTCGAAAAAGGCG-----CCGAAAGGAATCATGGATGCGCTGT 2266
BSNT_01402 2276 TTATCCGTATGTTTTT--ATGGGCAAAGGAAGAGGGCTGTACGTCATTTA 2323
|.||| |||.|.||| |||||.|||.|||.||||||..|||.|.||.|
BL03028___yfi 2267 TCATC--TATTTATTTCAATGGGGAAAAGAACAGGGCTACACGGCCTTCA 2314
BSNT_01402 2324 ATATGGGGATGGCACCCTTGGCCAATGTCGGCACTGCCTTTACA-TCCTT 2372
|||||||.|||||.||.||..|.|||||.||.||..|.||| || ||.||
BL03028___yfi 2315 ATATGGGAATGGCCCCTTTATCGAATGTAGGGACAACGTTT-CAGTCATT 2363
BSNT_01402 2373 CTGGTCCGAAAGGTTTGCCGCTGTCATTTTTAATAATGTCAGATACATGT 2422
||||.|.||..||.|.|||||.||.|||||.||.||||||||.|||||||
BL03028___yfi 2364 CTGGACGGAGCGGCTGGCCGCCGTGATTTTCAACAATGTCAGCTACATGT 2413
BSNT_01402 2423 ACAGTTTCAGCGGCCTAAGAGCCTTTAAAGAAAAATATAAACCGGAGTGG 2472
|||||||||||||.||..|..|.|||||||||||||||||.||||..|||
BL03028___yfi 2414 ACAGTTTCAGCGGACTGCGGTCTTTTAAAGAAAAATATAAGCCGGTTTGG 2463
BSNT_01402 2473 CGAGGGAAATACTTAGCGTATCGGAAAAACAGATCTCTTTCTGTCACCAT 2522
||.||||||||.|||||.||||||||||||.|||||||..|.||.||.||
BL03028___yfi 2464 CGGGGGAAATATTTAGCCTATCGGAAAAACCGATCTCTCCCGGTAACGAT 2513
BSNT_01402 2523 GTTCCTCGTTACACGTCTGATTGGCAAAAGCAA--AAAAGACTCCGTCTA 2570
|.||||.||.|||.|.|||||.||.|..|| || |||.||
BL03028___yfi 2514 GATCCTTGTGACAAGGCTGATCGGAAGGAG-AACGAAATGA--------- 2553
BSNT_01402 2571 A 2571
BL03028___yfi 2553 - 2553
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