Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01369 and BL03021
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01369___yfiE.1.5803.seq
# -bsequence dna-align/BL03021___yfiE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01369___yfiE-BL03021___yfiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01369___yfiE-BL03021___yfiE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01369___yfiE
# 2: BL03021___yfiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity: 589/933 (63.1%)
# Similarity: 589/933 (63.1%)
# Gaps: 147/933 (15.8%)
# Score: 1570.5
#
#
#=======================================
BSNT_01369___ 1 ATGAC-CAGC--ATTCATGAGGATACACACATTGGCTATGCCAAACTCAC 47
||||| |||| ||.||...||..||..|..|.||.||||.|||.||.|.
BL03021___yfi 1 ATGACGCAGCAAATCCACCCGGGCACTGAGCTCGGATATGTCAAGCTGAA 50
BSNT_01369___ 48 AATTCGCAGTCTGGAGCGTTCGCTTCAGTTCTACTGTAACGTCATCGGTT 97
..|..||.||||.||..|.|||.||...||.|||.|..|.||.|||||||
BL03021___yfi 51 GGTGAGCCGTCTTGAAAGATCGGTTTCTTTTTACAGGGATGTGATCGGTT 100
BSNT_01369___ 98 TTCAAGTCTTAAAA-AAGACGGATCGCCAA----GCTGAATTAACGGCTG 142
|||||||.|||||| |.||||| ||| ||.||.||.||.|.||
BL03021___yfi 101 TTCAAGTATTAAAACAGGACGG-----CAAAACGGCGGAGTTCACAGTTG 145
BSNT_01369___ 143 ACGGGAAA----CGCGTACTGCTT-ATTCTTGAAGAAAATCCGAGCGCTG 187
||||.||| |||.| || ||..||||.||.|.|||.|..||||
BL03021___yfi 146 ACGGAAAAAATCCGCTT-----TTGATCATTGAGGAGATTCCAAATGCTG 190
BSNT_01369___ 188 TCG-TCTTGCCTGAACGGTCTGTGACAGGTCTTTATCACTTTGCGATTCT 236
|.| |||| ||||||||.||.|...||||.||||||||.|||||.|||.|
BL03021___yfi 191 TTGTTCTT-CCTGAACGATCGGCAGCAGGCCTTTATCATTTTGCCATTTT 239
BSNT_01369___ 237 TCTTCCGGACAGGAAAG-AACTTGGGATCGC-GCTCGCCCGCCTGA---- 280
.|||||..|| .||||| |.||.||.||.|| | |||
BL03021___yfi 240 GCTTCCAAAC-CGAAAGCAGCTCGGCATGGCTG----------TGAAGCA 278
BSNT_01369___ 281 -TTGAAC----ACGGCATTGCTATCGGACATGGAGACCATGCTGTCAGCG 325
||||.| .||||||||...||||.||.|||||.||...||||||||
BL03021___yfi 279 TTTGATCCGCGCCGGCATTGAACTCGGCCAGGGAGATCACCTTGTCAGCG 328
BSNT_01369___ 326 AAGCGCTTTACCTGTCTGATCCTGACGGAAACGGCATTGAAATGTA-CGC 374
|.|||.|||||.||||.||||||||...|||.||.||.|||||.|| |||
BL03021___yfi 329 AGGCGTTTTACTTGTCAGATCCTGATCAAAATGGAATCGAAATCTACCGC 378
BSNT_01369___ 375 TGACCGCCCCCGCAGCA--CATGGCAGCGTGATCGGGAAGGAAACTACGT 422
|||||.||.|| || | .||||.||||.|||..|.|.||.||||||||
BL03021___yfi 379 -GACCGTCCGCG-AG-AGGGATGGAAGCGCGATGAGCAGGGGAACTACGT 425
BSNT_01369___ 423 CATG---ACGACAACCGCTGTTGACATTGAGGGCCTTCTGGAAGAGGCAG 469
.||| ||| .|.||| |||||..|..|.||.||||||||||| ||
BL03021___yfi 426 GATGGGTACG-GAGCCG--GTTGATGTCCAAGGACTTCTGGAAGA---AG 469
BSNT_01369___ 470 GAGATGAGC-------GGAAAACATCG--CTTCC----GAACGATACAAT 506
..|||| || ||.|| | ||||| ||| ||||.
BL03021___yfi 470 CCGATG-GCCACGAATGGCAA-----GGTCTTCCCCCGGAA----ACAAA 509
BSNT_01369___ 507 CATCGGACACATTCATCTGCATATCAGTGATTTGAAAGAAGCAAAGGCGT 556
.|||||||||.|.|||.|.||..||.|.||||||||..|.||.||.|..|
BL03021___yfi 510 AATCGGACACGTCCATTTTCACGTCCGGGATTTGAAGCAGGCGAAAGAAT 559
BSNT_01369___ 557 TTTATACA-GATGTACTGGGCTTTGACATTGTCGGAAACTATGCGGGCAT 605
|||| .|| ..|||||||||.|||||.||....|||.|.|||.....|||
BL03021___yfi 560 TTTA-CCACTCTGTACTGGGATTTGATATCACAGGAGATTATCAACACAT 608
BSNT_01369___ 606 GTCCGCCCTCTTCGTTTCAGCCGGGGGGTACCACCATCATATCGGCTTAA 655
|||.||.||.||.||.||.|||||.||.|||||.||||||||||||||||
BL03021___yfi 609 GTCAGCGCTTTTTGTCTCTGCCGGAGGCTACCATCATCATATCGGCTTAA 658
BSNT_01369___ 656 ACATTTGGGCGGGA-AGAAATGCGCC----GCCTAAACCGACAAATGC-- 698
||||.|||||.||| || .||||||| ||| |||....||||
BL03021___yfi 659 ACATCTGGGCCGGACAG-CATGCGCCATTTGCC----CCGCTTGATGCGG 703
BSNT_01369___ 699 CAGCGGACTAGATTATTATACTGTTGTCCTGCCTCACCAAGAGGAGCT-- 746
|| ||..|.|..|||||.||.|||.|..|.||..|.|.||.|||.||
BL03021___yfi 704 CA--GGCATGGCGTATTACACGGTTCTTTTACCGAATCGAGCGGAACTTG 751
BSNT_01369___ 747 ---GGATTTGGTGGCAAACCGAGTCAAAC----ATGC-CGGG-TATTCGA 787
|.||| ||||| .|||| |.|| |||| |||.|..
BL03021___yfi 752 ACCGAATT-----GCAAA------AAAACTGAAAAGCTCGGGTTATGCCG 790
BSNT_01369___ 788 TTGAAGA-GACGGAAAACAGC----TTTCGTGTGAAAGACCCTGTTTCCG 832
||||..| || .|||||| || || |||.||||||||.|..||.|
BL03021___yfi 791 TTGAGCATGA-AGAAAAC-GCATGGTT---TGTTAAAGACCCGGCATCAG 835
BSNT_01369___ 833 GCGCCT----ATATTACATTTGTGA---TTTAA 858
| | ||||.|.|| ||| |||.|
BL03021___yfi 836 G----TATTGATATCAGAT---TGACCGTTTGA 861
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