Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02463 and BL02972
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:01
# Commandline: needle
# -asequence dna-align/BSNT_02463___ylaK.1.5803.seq
# -bsequence dna-align/BL02972___ylaK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02463___ylaK-BL02972___ylaK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02463___ylaK-BL02972___ylaK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02463___ylaK
# 2: BL02972___ylaK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1354
# Identity: 1007/1354 (74.4%)
# Similarity: 1007/1354 (74.4%)
# Gaps: 50/1354 ( 3.7%)
# Score: 3641.5
#
#
#=======================================
BSNT_02463___ 1 TTGAGTAAAATTTATGTGTTAGATACGAATGTGTTATTACAGGATCCTAA 50
||||||||||||||||||.|||||||||||||||||||.||||||||.||
BL02972___yla 1 TTGAGTAAAATTTATGTGCTAGATACGAATGTGTTATTGCAGGATCCGAA 50
BSNT_02463___ 51 CGCGATATTTTCTTTTGAAGAAAATGAGGTTGTCATCCCTGCTGTCGTTT 100
..|.||.||||||||||||||.||.|||||.||||||||.||||||||.|
BL02972___yla 51 TTCAATCTTTTCTTTTGAAGATAACGAGGTCGTCATCCCGGCTGTCGTAT 100
BSNT_02463___ 101 TAGAAGAGGTTGATTCAAAAAAACGGTATATGGACGAAGTTGGGAGGAAT 150
|.||.||.||.||||||||.|||||.||.|||||.|||.|||||||||||
BL02972___yla 101 TGGAGGAAGTCGATTCAAAGAAACGTTACATGGATGAAATTGGGAGGAAT 150
BSNT_02463___ 151 GCAAGGCACGTATCTAAGCTAATCGA-----TGCGCTAAGACAAAAGGGC 195
|||||||.|||||||||..|.||.|| ||||.| .|||.||.
BL02972___yla 151 GCAAGGCGCGTATCTAAATTGATAGATGATTTGCGTT-----TAAAAGGA 195
BSNT_02463___ 196 AGGCTGCATGAGCATGTACCGCTTGACACCGGCGGCACACTGAGAATTGA 245
|.||||.||||..||||.||.||....|.|||.||.|...|||||||.||
BL02972___yla 196 AAGCTGTATGAAAATGTTCCTCTCCCTAACGGAGGAAGCTTGAGAATCGA 245
BSNT_02463___ 246 ACTGAATCATCGTTCGTTTCACCAGCTGCAAGAGATCTTTATTGAAAAGA 295
.||.||.|||||.||.|||||.|||||.||.||.||||||||.|||||.|
BL02972___yla 246 GCTTAACCATCGCTCTTTTCAGCAGCTTCAGGAAATCTTTATCGAAAAAA 295
BSNT_02463___ 296 CGAACGATAATCGCATATTAGCCGTTGCGAAAAACTTGAGCCTAGAGGAA 345
|.|.|||.||.||.||.||||||||.|||||||||.|.|||||.||.|||
BL02972___yla 296 CTAGCGACAACCGGATTTTAGCCGTAGCGAAAAACCTCAGCCTTGAAGAA 345
BSNT_02463___ 346 GAAACCAAGGAAAATGGCAGGCCGGTTATCCTCGTCAGTAAGGATGTACT 395
|||||.||.|||...|||||.||||||||.||.|||||.||.|||.|.||
BL02972___yla 346 GAAACGAAAGAAGGCGGCAGACCGGTTATTCTTGTCAGCAAAGATATGCT 395
BSNT_02463___ 396 GGTCAGGGTTAAAGCCGACGCAATCGGACTGCTTGCTGAAGATTTCTTGA 445
|.||.|.||.||||||||.||.|||||..||.|..|.||.|||||.|||.
BL02972___yla 396 GATCCGCGTCAAAGCCGATGCCATCGGGTTGATGTCAGAGGATTTTTTGC 445
BSNT_02463___ 446 ATGACCGGGTTGTGGACAATGATGAAATGTACAGCGGCTATAAAGATTTA 495
|.|||.|||||||.|||||||||||.||.||||||||.||||..||..|.
BL02972___yla 446 ACGACAGGGTTGTCGACAATGATGATATATACAGCGGTTATACGGACGTG 495
BSNT_02463___ 496 TATATCAGC---CAGCAGCTG--TTCAGCTCTTTTTACGGGAAAAATCA- 539
||.||..|| .|.|||.|| |||| ||||| ..||.||||
BL02972___yla 496 TACATTCGCTCGGATCAGATGAATTCA----TTTTT----TGAACATCAT 537
BSNT_02463___ 540 -AATTTCAG-TAAACGATGTGAAACAGC----ATGCGTTTTATCCGAATC 583
|.||.||| |..|||| ||.|||| |..||.|.|.||||||.|
BL02972___yla 538 TATTTGCAGCTTGACGA----AATCAGCGAGGAGCCGCTGTGTCCGAACC 583
BSNT_02463___ 584 AGTTTGCTTTAATGAAGGATGAGCTAGGAGGGTCCTCCTCGGCAGTCGGA 633
||||||...|.||||||||.|.|||.||.||.||.||.||.||.||.|||
BL02972___yla 584 AGTTTGTCGTCATGAAGGACGCGCTCGGCGGATCATCTTCTGCGGTTGGA 633
BSNT_02463___ 634 ATTGCAGACAAAACCGGAA----CGGTATTAAAAAGACTCGTATTTGATG 679
||.|.|||..|||.||||| || |||||||| ||.||.|||||..
BL02972___yla 634 ATCGTAGATCAAAGCGGAAAAGCCG---TTAAAAAG-CTTGTTTTTGACC 679
BSNT_02463___ 680 ATGAACATATATGGGGAATCAG--GCCGAAAAATGTACAGCAGACAATGG 727
|.||.||..|.|||||.|||.| .||| |||.|||||||||||.||||
BL02972___yla 680 AGGAGCAGGTTTGGGGCATCCGTTCCCG--AAACGTACAGCAGACGATGG 727
BSNT_02463___ 728 CTTTAGAGCTTTTGCTGCGGGAAGATATTCCGCTTGTCACCCTGATCGGA 777
|.||.||.|||.|..|..|..|||||||||||||||||||||||||||||
BL02972___yla 728 CGTTGGAACTTCTATTAAGACAAGATATTCCGCTTGTCACCCTGATCGGA 777
BSNT_02463___ 778 AAAGCAGGAACCGGCAAAACGCT-CTTAACTTTGGCGGCAGGGCTATTAC 826
|||||.||.||.||.|||||.|| ||| .|..||||.||.||..|..|.|
BL02972___yla 778 AAAGCCGGCACAGGAAAAACACTGCTT-GCGCTGGCAGCCGGATTGCTGC 826
BSNT_02463___ 827 AGACAGAAGA-CTTGGGAATATATAAAAAGCTGGTTGTCGCAAGGCCGAT 875
|||||||.|| ||.|||||| |.||||||.||.||||||.||||||||||
BL02972___yla 827 AGACAGAGGATCTGGGGAAT-TTTAAAAAACTTGTTGTCACAAGGCCGAT 875
BSNT_02463___ 876 TGTTCCTGTTGGCAAGGACATCGGGTATTTGCCAGGTGAAAAAGAGGAAA 925
.||||||||.||.||.||..||||.|||.|.||.|||||||||||.||||
BL02972___yla 876 CGTTCCTGTCGGAAAAGATCTCGGCTATCTTCCGGGTGAAAAAGAAGAAA 925
BSNT_02463___ 926 AGCTAAAGCCTTGGATGCAGCCGATTTTTGACAACTTAGAGTTTCTGTTT 975
|.||....||.|||.|.|||||.||||||||.|||.|.||.|...||||.
BL02972___yla 926 AACTTCGACCGTGGGTCCAGCCTATTTTTGATAACCTGGAATACTTGTTC 975
BSNT_02463___ 976 AATGCAAAAAAACCAGGGGAGCTTGATGCTATTTTGGCGGGAATTGGCTC 1025
||||||||||||||.|||||.|||||||.||||||||||||.||.|||||
BL02972___yla 976 AATGCAAAAAAACCGGGGGAACTTGATGATATTTTGGCGGGGATGGGCTC 1025
BSNT_02463___ 1026 AATTCAGGTAGAGGCGCTGACTTATATCAGAGGGAGAAGCATTCCAGATC 1075
.|||||.||.||.||.||.||||||||.||.||.|||||||||||.||.|
BL02972___yla 1026 CATTCAAGTCGAAGCCCTTACTTATATAAGGGGCAGAAGCATTCCCGACC 1075
BSNT_02463___ 1076 AATTTATTATCATTGATGAAGCGCAAAATTTGACCAGGCATGAGGTGAAA 1125
||||.||.|||||||||||.||.||||||.||||||.||||||.||.|||
BL02972___yla 1076 AATTCATCATCATTGATGAGGCCCAAAATCTGACCAAGCATGAAGTCAAA 1125
BSNT_02463___ 1126 ACGTTGCTGACGAGAGTCGGTGAAGGCAGTAAAATTGTCTTAATGGGTGA 1175
|||.|.|||||..|.|||||.||||||||.|||||.||.||.|||||.||
BL02972___yla 1126 ACGCTTCTGACACGCGTCGGGGAAGGCAGCAAAATCGTATTGATGGGAGA 1175
BSNT_02463___ 1176 CCCTGAACAAATTGATCACCCATATTTAGACAGTCTGAACAATGGTTTGG 1225
..|.|||||.||.|||||.||.|||||.||.....|||||||.||..|||
BL02972___yla 1176 TACCGAACAGATCGATCATCCTTATTTGGATGCGATGAACAACGGCCTGG 1225
BSNT_02463___ 1226 CCTATGTGGTTGAGCGGTTTAAAGGACAACCCATCTCAGGCAGCGTGAAG 1275
|||||||.||.|||||.|||||||..|||...||.||.||.|.|||||||
BL02972___yla 1226 CCTATGTAGTAGAGCGCTTTAAAGATCAAAAAATTTCCGGAAACGTGAAG 1275
BSNT_02463___ 1276 CTGTTAAAAGGTGAGAGATCAGGTCTCGCCCAGCTCGCAGCTGATTTGCT 1325
||.||||||||.|||.|.||..|.||.||...|||.|||||.||..||||
BL02972___yla 1276 CTTTTAAAAGGAGAGCGCTCCCGGCTTGCAAGGCTTGCAGCAGACCTGCT 1325
BSNT_02463___ 1326 GTAA 1329
||||
BL02972___yla 1326 GTAA 1329
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