Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01674 and BL02830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_01674___yheD.1.5803.seq
# -bsequence dna-align/BL02830___yheD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01674___yheD-BL02830___yheD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01674___yheD-BL02830___yheD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01674___yheD
# 2: BL02830___yheD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1517
# Identity: 899/1517 (59.3%)
# Similarity: 899/1517 (59.3%)
# Gaps: 313/1517 (20.6%)
# Score: 2428.5
#
#
#=======================================
BSNT_01674___ 1 -------GTGAATC-CTAAACGGTTTTTGATCGGCATAGACAAAACCAGT 42
||.||.| || .|||| |||||||..||.|.||.|||
BL02830___yhe 1 ATGACCGGTCAACCGCT-GACGG-------TCGGCATCCACCAGACGAGT 42
BSNT_01674___ 43 GAAAACACCCTGTTTCTGCCCTCTTCGCTGAAGCGAGACGGACTTTTGCA 92
||||||||..||.|.||||||.||||..|.||.|..|||||.||.|| |
BL02830___yhe 43 GAAAACACGATGCTCCTGCCCGCTTCTTTCAAACAGGACGGTCTGTT--A 90
BSNT_01674___ 93 T--GCCGCATTCGGAACGAAGGTTGTCAGATGCCACGTTGCTTACA---G 137
| |||||.|||||.||||..||||...|.|||||.|| || || |
BL02830___yhe 91 TTCGCCGCTTTCGGTACGAGTGTTGAACGGTGCCATGT--CT--CATTTG 136
BSNT_01674___ 138 AC-GGCATCTGGAACAAACCGTGCTACTCTCTGAAAATCTGTTTCATGAG 186
|| |.|||.||.|.|..|||||..||.|.||.||||||||||...|..|.
BL02830___yhe 137 ACAGCCATTTGAAGCGCACCGTTTTATTATCCGAAAATCTGTACAAAAAC 186
BSNT_01674___ 187 CTTTTGCTCCCCCACCG-----AAGCAGGGCTGATATACTGATTCATGAT 231
||...|.|.||..|||| ||||....||| ||..|||..||.
BL02830___yhe 187 CTGCGGATTCCGTACCGCGGCAAAGCCTCCCTG-----CTTTTTCGCGAC 231
BSNT_01674___ 232 CATACAGTGCATATCGGGCCGTTAGTCGGCATCTTTACGGCAGGGTTTA- 280
.||||.||..||||||||||.|||.||||.||.||.||.||.||.||.|
BL02830___yhe 232 AATACCGTCTATATCGGGCCTTTAATCGGGATTTTCACCGCCGGTTTCAC 281
BSNT_01674___ 281 ----------CTGTATCTCT------TGAACGTCCATTTAAGGATCGTTC 314
|||.||| || .|||.||| ||||
BL02830___yhe 282 AAAATCGCAGCTGGATC-CTGTCAGAGGAAGGTC--TTTA---------- 318
BSNT_01674___ 315 CCTCTTTTTTTCTAAACTTGTCACG-----TTACACGAGCAAGCCGGAGG 359
||||||||.||.|||.|.||| |..|.|| ||.|||||
BL02830___yhe 319 ----TTTTTTTCGAAGCTTTTGACGATGGATCTCCCG-----GCAGGAGG 359
BSNT_01674___ 360 CTACTGCT-TCGTTTTTGGCGCGCACCAAATCAATTGGGAGGAAGGCACG 408
||||.||| || |.||.||.||||||||.||.||||||||.|||||||||
BL02830___yhe 360 CTACAGCTATC-TGTTCGGGGCGCACCAGATTAATTGGGAAGAAGGCACG 408
BSNT_01674___ 409 ATTGAAGGC-CTCCTTTACAGGGAAAACGGCTGGGAGAAAAAAATCGTTC 457
.||.|||| |||.|||.|||||||||||||||||||.|....||.||.|
BL02830___yhe 409 -GTGCAGGCTCTCATTTTCAGGGAAAACGGCTGGGAGGAGGCCATAGTCC 457
BSNT_01674___ 458 CATTGCCGAACGTCGTTTATGACCGTTTGCCGAACCGAAAAATTGAAGAT 507
|..||||.||.||.||.||.|||.|..||||||||||.|||...|||||.
BL02830___yhe 458 CGCTGCCTAATGTTGTATACGACAGACTGCCGAACCGCAAAGCCGAAGAA 507
BSNT_01674___ 508 TCACTTC-TCTTGCAACATACAAAAAAGAGGCTGATCGATGAATATCAGA 556
|| ||.| .|||||...|.||||||||..||||.||.||||||||.|..|
BL02830___yhe 508 TC-CTCCGCCTTGCGGGAAACAAAAAAACGGCTTATGGATGAATACCGCA 556
BSNT_01674___ 557 TCCCATGGTTTAATAAAACG---TTTTTCAATAAATGGAACGTTC-ATCA 602
|.||.|||||.||| .|| ||.||.|||||||||.| |.|| ||.|
BL02830___yhe 557 TTCCGTGGTTCAAT---CCGGGCTTCTTTAATAAATGGGA-GATCTATGA 602
BSNT_01674___ 603 ATTGCTCGAAAAAGATCCGAGA--ACGGC---------ACCCTTTTTGCC 641
||..||..|..|||| ||||| ||.|| .||.||||.|.|
BL02830___yhe 603 ATGTCTGCAGCAAGA--CGAGAGGACAGCGGAATTGCTTCCATTTTCGGC 650
BSNT_01674___ 642 TAGATCCGAGCTGACACCGTCTGTGGAGCTGATTGATGAGCTCTGTGGCG 691
|||| ||||.|..||.||
BL02830___yhe 651 -------------------------------ATTG--GAGCCCGATGCCG 667
BSNT_01674___ 692 CATACAAAA---AAGTCTAT-----ATCAAACCGGC-----TAATGGA-- 726
|.|||| |||.| || |.|||..|||| |.|||.|
BL02830___yhe 668 ---ATAAAATCGAAGAC-ATGATCGACCAATACGGCTTCATTTATGTAAA 713
BSNT_01674___ 727 -----------GCA--CTCGGCACCGGCATTTATCAGCT----------G 753
||| .||||||..|||||.|..||||| |
BL02830___yhe 714 GCCCGCCGGCGGCAGTTTCGGCAAAGGCATATTCCAGCTTTCAAAACGGG 763
BSNT_01674___ 754 AAAAGAACAG-ATGGCGGCCTGACGGTAAAGCATACGAATGACGCCAAAA 802
||.|.|||.| ||....|||.||| |.|| |||| |.||.| |
BL02830___yhe 764 AAGAAAACGGTATTCTTGCCAGAC----ATGC---CGAA-GGCGTC---A 802
BSNT_01674___ 803 CATTTACTTCGATTGATTATTCCGATGCCGCCTCATTCCTT--------- 843
|||.|..|||| ||||.|| ||.|.|..||
BL02830___yhe 803 CATCTTTTTCG---------TCCGCTG----CTGAATGTTTAAAAGAATG 839
BSNT_01674___ 844 GCAGAAT--TTCAAAAACAGCAGAACCCGTCCGACTTTCTCAT-----TC 886
|||| || ||||.||||| .|| ||||.|| .|
BL02830___yhe 840 GCAG-ATGCTTCACAAACA-------------TAC-TTCTTATCTTGCCC 874
BSNT_01674___ 887 AGCAAGGTGTTGATCTCATCGAATTTCAAGG--CA--AACCAGCGGATTT 932
|||||||..|.||.|..||||||.| || || |.||.||.|||||
BL02830___yhe 875 AGCAAGGCATCGAACGGATCGAAGT----GGATCATCACCCGGCAGATTT 920
BSNT_01674___ 933 CCGTGTCCATACCAATAAAAACAGAAAAGGAAAATGGACAGTGACAGCAA 982
|.|.||.|||||.||.||||||.|||||||..|||||||.||.|||||.|
BL02830___yhe 921 CAGGGTTCATACAAACAAAAACGGAAAAGGTCAATGGACCGTCACAGCCA 970
BSNT_01674___ 983 TCGCCGTAAAAATTTCCGGAAAGAACAGCATTACAACACATCTTTCTAAC 1032
||||.|..|||||..|.||||||.||.|.||||||||.|||.|.||.|.|
BL02830___yhe 971 TCGCGGCCAAAATCGCTGGAAAGGACGGAATTACAACCCATATGTCGAGC 1020
BSNT_01674___ 1033 GGCGGCACTGTAAAGACACTTGCGGAAGTGTACGATGATCCCGCTGAAAG 1082
||||||.|.||.||.||||||||.||..|.||.||||||||
BL02830___yhe 1021 GGCGGCGCCGTGAAAACACTTGCAGAGATTTATGATGATCC--------- 1061
BSNT_01674___ 1083 AGTTGAGGTCATTAAAAAGCTT-----TCTGCAGCGGCACTGA------C 1121
|.||| |||.|||| ||||||...| |||| |
BL02830___yhe 1062 ---TCAGG------AAAGGCTTCACACTCTGCAAAAG--CTGACAAAAGC 1100
BSNT_01674___ 1122 GGC---------AAGCCATGTCCTTCATGATCATATCGAGGGGTTTATCG 1162
||| .||||..||||||.|.||..|..|.||.||.||.||||
BL02830___yhe 1101 GGCGGTCCTTCTCAGCCGGGTCCTTGACGAAAAGCTTGACGGTTTCATCG 1150
BSNT_01674___ 1163 GGGAGATCGGTTTCGATTTTGGCATTGATCAGAACGGTAAA-GTATGGAT 1211
|.||.|||||.||.|| ..|||.||||..|.|..|||.||| ||.|||.|
BL02830___yhe 1151 GAGAAATCGGCTTTGA-CCTGGGATTGGACCGTTCGGGAAAGGTGTGGCT 1199
BSNT_01674___ 1212 GTTTGAAGCGAATTCGCGCCCGGGCCGAAGCATTTTTTCTCATCCAAAT- 1260
|||||||||.||.||.||.||.||||||.|.||.||.||.|||||...|
BL02830___yhe 1200 GTTTGAAGCCAACTCCCGGCCCGGCCGAGGAATCTTCTCCCATCCCCGTC 1249
BSNT_01674___ 1261 TTGCATCATGTTGATTCTCTTACAAAACG-----AAGAAGCTTTGAATAC 1305
|.||||| || |.|..|.||| |||| |||||||||||||||.
BL02830___yhe 1250 TGGCATC-TG-TCAGCCGCTT----AACGAAGAAAAGAAGCTTTGAATAT 1293
BSNT_01674___ 1306 GCGTCATATTTATCTGAGAAGGCAATCATATCTCCTGAAG-CATTGTGGC 1354
||.||.||||||.|.||..||.|||||.|...|||.||.| || ||||||
BL02830___yhe 1294 GCTTCTTATTTAACCGAACAGTCAATCCTTAATCCGGAGGACA-TGTGGC 1342
BSNT_01674___ 1355 CT---------TCGTAA 1362
.| .|||.|
BL02830___yhe 1343 ATGACCTCAAGCCGTGA 1359
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