Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03390 and BL02788
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_03390___spoIVA.1.5803.seq
# -bsequence dna-align/BL02788___spoIVA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03390___spoIVA-BL02788___spoIVA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03390___spoIVA-BL02788___spoIVA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03390___spoIVA
# 2: BL02788___spoIVA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1487
# Identity: 1206/1487 (81.1%)
# Similarity: 1206/1487 (81.1%)
# Gaps: 16/1487 ( 1.1%)
# Score: 4876.5
#
#
#=======================================
BSNT_03390___ 1 TTGGAAAAGGTCGATATTTTCAAGGATATCGCTGAACGAACAGGAGGCGA 50
||||||||||||||||||||||||||||||||||||||||||||||||||
BL02788___spo 1 TTGGAAAAGGTCGATATTTTCAAGGATATCGCTGAACGAACAGGAGGCGA 50
BSNT_03390___ 51 TATATACTTAGGAGTCGTAGGTGCTGTCCGTACAGGAAAATCCACGTTCA 100
||||||||||||.||||||||.|||||.||||||||||||||.|||||.|
BL02788___spo 51 TATATACTTAGGTGTCGTAGGAGCTGTACGTACAGGAAAATCTACGTTTA 100
BSNT_03390___ 101 TTAAAAAATTTATGGAGCTTGTGGTGCTCCCGAATATCAGTAACGAAGCA 150
|.|||||||||||||||||.|||||||||||||||||||..||.||||||
BL02788___spo 101 TCAAAAAATTTATGGAGCTAGTGGTGCTCCCGAATATCAACAATGAAGCA 150
BSNT_03390___ 151 GACCGGGCCCGAGCGCAGGATGAACTGCCGCAGAGCGCAGCCGGCAAAAC 200
||||||||.||.||.||.|||||.||.||.||.||.||.||.||||||||
BL02788___spo 151 GACCGGGCGCGCGCACAAGATGAGCTCCCCCAAAGTGCCGCTGGCAAAAC 200
BSNT_03390___ 201 CATTATGACTACAGAGCCTAAATTTGTTCCGAATCAGGCGATGTCTGTTC 250
|||||||||.||.||.||.||.|||||||||||||||||.|||||.||||
BL02788___spo 201 CATTATGACAACTGAACCGAAGTTTGTTCCGAATCAGGCAATGTCAGTTC 250
BSNT_03390___ 251 ATGTGTCA--GACGGACTCGATGTGAATATAAGATTAGTAGATTGTGTAG 298
| ||||| |||||||||||||||||||||||..|.||.||.||.||.|
BL02788___spo 251 A--TGTCAGTGACGGACTCGATGTGAATATAAGGCTTGTCGACTGCGTCG 298
BSNT_03390___ 299 GTTACACAGTCCCCGGGGCTAAAGGATATGAAGATGAAAACGGGCCGCGG 348
|.||.||.||.||||||||.||.|||||.||.|||||||||||||||.|.
BL02788___spo 299 GCTATACTGTACCCGGGGCAAAGGGATACGAGGATGAAAACGGGCCGAGA 348
BSNT_03390___ 349 ATGATCAATACGCCTTGGTACGAAGAACCGATCCCATTTCATGAGGCTGC 398
|||||||||||.||||||||.|||||.|||||.||.|||||.||.|||||
BL02788___spo 349 ATGATCAATACTCCTTGGTATGAAGAGCCGATTCCGTTTCACGAAGCTGC 398
BSNT_03390___ 399 TGAAATCGGCACTCGAAAAGTCATTCAAGAACACTCGACCATCGGAGTTG 448
.|||||||||||..||||||||||.|||||.|||||.||.|||||.||||
BL02788___spo 399 CGAAATCGGCACGAGAAAAGTCATCCAAGAGCACTCCACAATCGGTGTTG 448
BSNT_03390___ 449 TCATTACGACAGACGGCACCATTGGAGATATCGCCAGA-AGTGACTATAT 497
|.||||||||.||||||||.||||||||.||||||||| || ||.|||.|
BL02788___spo 449 TGATTACGACTGACGGCACGATTGGAGAAATCGCCAGACAG-GATTATGT 497
BSNT_03390___ 498 AGAGGCTGAAGAAAGAGTCATTGAAGAGCTGAAAGAGGTTGGCAAACCTT 547
.||||||||||||.|.||.||.||.|||.|||||||||||||.|||||.|
BL02788___spo 498 CGAGGCTGAAGAACGGGTGATCGACGAGTTGAAAGAGGTTGGAAAACCGT 547
BSNT_03390___ 548 TTATTATGGTCATCAACTCAGTCAGGCCGTATCACCCGGAAACGGAAGCC 597
||||.|||||||||||.||.||.|||||||||||.||||||||.|||||
BL02788___spo 548 TTATCATGGTCATCAATTCCGTAAGGCCGTATCATCCGGAAACAGAAGC- 596
BSNT_03390___ 598 ATGC----GCCAGGATTTAAGCGAAAAATATGATATCCCGGTATTGGCAA 643
|| ||.||.|||.|.| |||||.||.||.||.|||||..||||.|
BL02788___spo 597 --GCTCAGGCAAGAATTGATG-GAAAAGTACGACATTCCGGTGCTGGCGA 643
BSNT_03390___ 644 TGAGTGTAGAGAGCATGCGGGAATCAGATGTGCTGAATGTGCTCAGAGAG 693
||||.||.||.||||||.|||||.|.||.||.||||..||.||||||||.
BL02788___spo 644 TGAGCGTTGAAAGCATGAGGGAAGCGGACGTTCTGAGCGTTCTCAGAGAA 693
BSNT_03390___ 694 GCCCTCTACGAGTTTCCGGTGCTAGAAGTGAATGTCAATCTCCCAAGCTG 743
||.||.|||||.||.||.|||||.|||||.||.||||||||.||||||||
BL02788___spo 694 GCGCTTTACGAATTCCCTGTGCTCGAAGTCAACGTCAATCTTCCAAGCTG 743
BSNT_03390___ 744 GGTAATGGTGCTGAAAGAAAACCATTGGCTGCGTGAAAGCTATCAGGAGT 793
|||.|||||..|.|||||.||.||||||||..|.||||.||||||.||.|
BL02788___spo 744 GGTGATGGTATTAAAAGAGAATCATTGGCTCAGGGAAAACTATCAAGATT 793
BSNT_03390___ 794 CCGTAAAGGAAACGGTTAAGGATATTAAACGGCTCCGGGACGTAGACAGG 843
||||.||.|||||.||.||.|||||||||.|.||..|.||.||.|||.|.
BL02788___spo 794 CCGTTAAAGAAACCGTCAAAGATATTAAAAGACTGAGAGATGTCGACCGC 843
BSNT_03390___ 844 GTTGTCGGCCAATTCAGCGAGTTTGAATTCATTGAAAGTGCCGGATTAGC 893
||.|||||.||.||||||||.|||||.|||||.||..|.||..|..|.||
BL02788___spo 844 GTCGTCGGACACTTCAGCGAATTTGATTTCATCGAGCGCGCAAGCCTCGC 893
BSNT_03390___ 894 CGGAATTGAGCTGGGCCAAGGAGTGGCAGAAATTGATTTGTACGCGCCGG 943
|||||||||..|||||||.||..|.||.|||||.|||||.||||||||||
BL02788___spo 894 CGGAATTGAAATGGGCCAGGGGATCGCGGAAATCGATTTATACGCGCCGG 943
BSNT_03390___ 944 ATCATCTATATGATCAAATCTTAAAAGAAGTTGTGGGCGTCGAAATCAGA 993
||.|.||.||.|||.||||.||.|..|||||.||.|||||.|||||||||
BL02788___spo 944 ATTACCTGTACGATGAAATTTTGAGGGAAGTCGTCGGCGTTGAAATCAGA 993
BSNT_03390___ 994 GGAAGAGACCATCTGCTTGAGCTCATGCAAGACTTCGCCCATGCGAAAAC 1043
||||.|||.||.||.|||.||||||||||.||.||.||||||||.||.||
BL02788___spo 994 GGAAAAGATCACCTCCTTCAGCTCATGCAGGATTTTGCCCATGCCAAGAC 1043
BSNT_03390___ 1044 AGAATATGATCAAGTGTCTGATGCCTTAAAAATGGTCAAACAGACGGGAT 1093
.||||||||||||||.||.|||||.||.||||||||.|||||.||.||.|
BL02788___spo 1044 CGAATATGATCAAGTCTCAGATGCATTGAAAATGGTGAAACAAACCGGCT 1093
BSNT_03390___ 1094 ACGGTATTGCAGCGCCTGCTTTAGCTGATATGAGTCTCGATGAGCCGGAA 1143
|.||.||.|||||.||.||.|||.|.||||||||.||.|||||.||||||
BL02788___spo 1094 ATGGAATCGCAGCTCCCGCATTAACCGATATGAGCCTGGATGAACCGGAA 1143
BSNT_03390___ 1144 ATTATAAGGCAGGGCTCGCGATTCGGTGTGAGGCTGAAAGCTGTCGCTCC 1193
||.||.||||||||.||..|||||||.||..|||||||.||.||.||.||
BL02788___spo 1144 ATCATCAGGCAGGGTTCAAGATTCGGAGTCCGGCTGAAGGCGGTGGCGCC 1193
BSNT_03390___ 1194 GTCGATCCATATGATCAAAGTCGATGTCGAAAGCGAATTCGCCCCGATTA 1243
||||||.||||||||||||||||||||.||||||||.||.||.|||||.|
BL02788___spo 1194 GTCGATTCATATGATCAAAGTCGATGTGGAAAGCGAGTTTGCGCCGATCA 1243
BSNT_03390___ 1244 TCGGAACGGAAAAACAAAGTGAAGAGCTTGTACGCTATTTAATGCAGGAC 1293
|||||||.||.||.||.||.|||||||||||.||||||||||||||||||
BL02788___spo 1244 TCGGAACAGAGAAGCAGAGCGAAGAGCTTGTCCGCTATTTAATGCAGGAC 1293
BSNT_03390___ 1294 TTTGAGGATGATCCGCTCTCCATCTGGAATTCCGATATCTTCGGAAGGTC 1343
||||||||.||||||||.||.||||||||||||||.||.||||||| |..
BL02788___spo 1294 TTTGAGGACGATCCGCTGTCAATCTGGAATTCCGACATATTCGGAA-GAA 1342
BSNT_03390___ 1344 GC-TGAGCTCAATTGTGAGAGAAGGGATTCAGGCAAAGCTGTCATTAATG 1392
|| |||||||.||.||.|||||||||||||||||.|||||||||.|.|||
BL02788___spo 1343 GCTTGAGCTCGATCGTCAGAGAAGGGATTCAGGCGAAGCTGTCACTCATG 1392
BSNT_03390___ 1393 CCTGAAAACGCACGGTATAAATTAAAAGAAACATTAGAAAGAATCATAAA 1442
||||||||.||..|.|||||..|.||.||.||..|.||..|.||.||.||
BL02788___spo 1393 CCTGAAAATGCGAGATATAAGCTGAAGGAGACGCTGGAGCGCATTATCAA 1442
BSNT_03390___ 1443 CGAAGGCTCTGGCGGCTTAATCGCCATCATCCTGTAA 1479
.||||||||.||||||||.||.||.||||||.|.|||
BL02788___spo 1443 TGAAGGCTCAGGCGGCTTGATTGCGATCATCTTATAA 1479
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