Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03306 and BL02735
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03306___yprB.1.5803.seq
# -bsequence dna-align/BL02735___yprB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03306___yprB-BL02735___yprB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03306___yprB-BL02735___yprB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03306___yprB
# 2: BL02735___yprB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity: 870/1430 (60.8%)
# Similarity: 870/1430 (60.8%)
# Gaps: 304/1430 (21.3%)
# Score: 2465.0
#
#
#=======================================
BSNT_03306___ 1 ATGTCATTAAAAGGGAAACTCCAGCG-GATGAAAAAGCACATGGCGCTCG 49
|||||.||||||.|.|||||..|.|| .|| ||..|.|||.||| |
BL02735___ypr 1 ATGTCTTTAAAACGAAAACTTAATCGCTAT-AAGCATCACCTGG-----G 44
BSNT_03306___ 50 A-------CGAAGGAGAACAAAAAATAGAA------GCAGGCAAACAAGA 86
| |||| ||||.||||||..||| ||||..||
BL02735___ypr 45 AAATCAAGCGAA--AGAAGAAAAAACGGAACCTCCCGCAGATAA------ 86
BSNT_03306___ 87 AAACCACTTTGATGACATC-----CCGT---TTTT--AGAAGAGTGGGAG 126
|.||||.|| |||| |||| |.||||.||||..
BL02735___ypr 87 ----------GCTGACTTCCTTGTCCGTCAGTTTTGAAAAAGAATGGGCC 126
BSNT_03306___ 127 GCTTTTGGCATGAAGCCTTTCATCTTCGAAG-ATGAATATTGCCTCATCA 175
|...|.||..|.||.||.|...|.||.||.| ||| .||||||||.||||
BL02735___ypr 127 GAACTCGGTGTTAAACCATATGTGTTTGAGGAATG-CTATTGCCTGATCA 175
BSNT_03306___ 176 GAGAAGTAGAATATCCGCTTTCTCACCGCCATGGGTTA-TACAGC-TTTT 223
|.|||||.|..||.|||.|..||||....||| |||.| ||| || ||||
BL02735___ypr 176 GGGAAGTCGTTTACCCGTTGACTCATGTTCAT-GGTCATTAC-GCGTTTT 223
BSNT_03306___ 224 CTGAGCT---TGAGGAAGTGATCACACTG--------TGGAATCAA-AGC 261
||||||| |||| ||.| ||||| ||| |||
BL02735___ypr 224 CTGAGCTGCATGAG-----------ACGGTTAGGCGATGGAA-CAACAGC 261
BSNT_03306___ 262 GGCCTGTCGCATACGTTGTC-AGCAAAAGGGTATAACAAA---AACAACC 307
|.|.|.||.|||.||.|.|| ||| ||||||| |||.| |.|.|.|
BL02735___ypr 262 GCCGTTTCCCATTCGCTTTCAAGC-AAAGGGT---ACACACCGAGCCAGC 307
BSNT_03306___ 308 TCTTTTTCTTTGATACAGAAACAACCGGTCTTGGGGGCGGAGCTGGGAAT 357
||||.|||||||||||.|||||.||||||||.||.|||||.||.||.|||
BL02735___ypr 308 TCTTCTTCTTTGATACGGAAACGACCGGTCTCGGAGGCGGGGCCGGCAAT 357
BSNT_03306___ 358 ACCATTTTTTTGCTTGGGCATGCGAGAGTATATGAAGACCGAGT-GACAG 406
.|.||.||||||||.||.|||||.||.||.|||||.|||||.|| |.| |
BL02735___ypr 358 GCGATCTTTTTGCTCGGCCATGCAAGGGTGTATGACGACCGCGTAGTC-G 406
BSNT_03306___ 407 TCAAACAGCATCTTTTGCCCAAACCGGGGAACGAAGTCGCCTTGTACCAA 456
|||||||||||||..||||.||.||||||.||||||.||||.|.||.||.
BL02735___ypr 407 TCAAACAGCATCTGCTGCCAAAGCCGGGGTACGAAGCCGCCCTCTATCAC 456
BSNT_03306___ 457 AGCTTTTTAAGCGAGGTTGACATTACA-TCACTTGTGACCTACAACGGCA 505
||||||.|.||.||.||.||.||| || ||.|||||.|||||.|||||||
BL02735___ypr 457 AGCTTTCTGAGTGAAGTCGATATT-CAGTCTCTTGTCACCTATAACGGCA 505
BSNT_03306___ 506 AAGCCTTTGATTGGCCGCAGGTGAAAACAAGGCACACCTTGATCCGTGAC 555
||||.||.||.|||||.|||||||||||.||||||||..|||||||.|||
BL02735___ypr 506 AAGCGTTCGACTGGCCCCAGGTGAAAACGAGGCACACGCTGATCCGCGAC 555
BSNT_03306___ 556 AGACTTCCGAAGCTTCCGGAGTTTGGCCACTTTGATCTTTTGCATGGAGC 605
||..|.||.|||||||||||.||.|||||||||||.||..||||.|||.|
BL02735___ypr 556 AGGGTCCCAAAGCTTCCGGATTTCGGCCACTTTGACCTGCTGCACGGATC 605
BSNT_03306___ 606 TAGACGCCTGTGGAAACACAAAATGGACCGTGTATCTCTT-GGCACGGTT 654
..|.|||||.|||||.||.|||.|.|||||.||.|| ||| ||.|||||.
BL02735___ypr 606 CCGCCGCCTTTGGAAGCATAAATTTGACCGCGTTTC-CTTAGGGACGGTG 654
BSNT_03306___ 655 GAAAAAGAGGAGCTCGGCATCCGCAGG--CTAGAAGACACACCGGGCTAC 702
|||||.||.|||||.|||.| .|.|.| || |||||.||.||||||||.
BL02735___ypr 655 GAAAAGGAAGAGCTGGGCGT-TGTAAGAACT-GAAGATACGCCGGGCTAT 702
BSNT_03306___ 703 TTGGCGCCAATGCTTTACTTTCATTTTATCAAGGCGCAAGAGCCGG--AT 750
.|||||||.|||.|.||.|||||||||.|.||||.|.||..||||| ||
BL02735___ypr 703 CTGGCGCCGATGATGTATTTTCATTTTTTAAAGGAGGAACGGCCGGAAAT 752
BSNT_03306___ 751 CTTTTAAAAGGTGTCCTGCATCATAATGAAATGGATGTG-------TTAT 793
|.|| .||||.||..|||..||||||||..|.||.||| |.||
BL02735___ypr 753 CATT--GAAGGCGTTTTGCGCCATAATGAGCTTGACGTGCTTTCTTTAAT 800
BSNT_03306___ 794 CACTCATTTCATTGTACATCCATATGTCTAAAAAAATCCT--TTCAGAAT 841
||||| |.|||||||||.|.||.||.|||||||| .||.|.|.
BL02735___ypr 801 CACTC-------TTTACATCCATTTATCGAAGAAAATCCTCACTCCGGAG 843
BSNT_03306___ 842 C--ACATGCG---CCAAAAGAACACAGTGAAGCCTATGCTATGGCGAAAT 886
| ||| ||| .||||.||| ||| ||.||.|||||.||||
BL02735___ypr 844 CAGACA-GCGGAAGCAAACGAA-------AAG--TACGCGATGGCAAAAT 883
BSNT_03306___ 887 GGTTTATGGCTCATAAA----GAAACGGACCAAGCGATGAAGCAGTTGGA 932
||.| .|||...|| ||.||.||.|..||||....|||.|||.|
BL02735___ypr 884 GGCT----CCTCGCCAACCGGGAGACAGAGCTTGCGACAGCGCAATTGCA 929
BSNT_03306___ 933 AAGGCTTATAGAAAAATCGTTTGAGGACCAGGACA--GTGCACG-GC--- 976
|..||||..|.|||||.|.||||| ||| .||.||| ||
BL02735___ypr 930 AGAGCTTGAAAAAAAACCTTTTGA--------ACATTCTGAACGCGCATC 971
BSNT_03306___ 977 --TGGATTTATCGCTCCTGTACAAAAAACAAAATCGCTTG---GAAGAAG 1021
|.||||||||..|.|.|||.||||||||| .||.|| .||||||
BL02735___ypr 972 ATTCGATTTATCCATGCAGTATAAAAAACAA---GGCATGCTAAAAGAAG 1018
BSNT_03306___ 1022 CAG-TGCCGCTTTGG--GAAAAGCTGTCCCGCTCGCAAAA-CCAGAAGTG 1067
|.| .||| |||||| ||| |||| ||||| ..|||||
BL02735___ypr 1019 CCGCAGCC-CTTTGGCTGAA----------GCTC-CAAAATGGAGAAG-- 1054
BSNT_03306___ 1068 CAGGTACG----------CT-----GCTGTAATAGAGCTCGCGAAATATT 1102
||| || ||.|..||.||.||.||.|||||.|
BL02735___ypr 1055 -----ACGGAAAAACCGCCTGGCGCGCAGGCATCGAACTTGCCAAATACT 1099
BSNT_03306___ 1103 TTGAGCATAAGAAA--AAAAAATTCGGAAAAGC----ATTGCAAATAGCA 1146
||||.||| .|||| ...|.|||||| || .||| |..||||.
BL02735___ypr 1100 TTGAACAT-CGAAAGCGGGATATTCGG----GCCGCTCTTG-AGGTAGCG 1143
BSNT_03306___ 1147 GAGCAATTGCTTAGCGATGCGGCATGCTTATCAGAGAAAG-------AAA 1189
||..|..|||| |..||.|||.|.||..|| |||| ..|
BL02735___ypr 1144 GAAAACCTGCT----GGAGCAGCACGGTTCACA---AAAGTTTGAGCTGA 1186
BSNT_03306___ 1190 CTGAAAAA--------CTGCAT-GTGAGAATTGCC-----CGGCTGAA-- 1223
|.|||||| |.||.| .|||||| |.| ||||||.|
BL02735___ypr 1187 CCGAAAAAGAAATGGCCGGCCTCTTGAGAA--GGCGCGAGCGGCTGGAAA 1234
BSNT_03306___ 1224 ---------GAGGAAATATTCC------------------------TCTT 1240
||.|||||||||| ||||
BL02735___ypr 1235 GGAAATACGGACGAAATATTCCCCGGGCAAGCGCAGAAAACGACGATCTT 1284
BSNT_03306___ 1241 --AA-------------------------- 1242
||
BL02735___ypr 1285 CGAAAGCCAAACATTTCAAGCACGTTATGA 1314
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