Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00999 and BL02706
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_00999___ydhL.1.5803.seq
# -bsequence dna-align/BL02706___ybcL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00999___ydhL-BL02706___ybcL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00999___ydhL-BL02706___ybcL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00999___ydhL
# 2: BL02706___ybcL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1416
# Identity: 694/1416 (49.0%)
# Similarity: 694/1416 (49.0%)
# Gaps: 492/1416 (34.7%)
# Score: 1267.5
#
#
#=======================================
BSNT_00999___ 1 ATG------AATTTCAAAGTTTTCCTGCTTGCAGCTTCTACGATTGCAGT 44
||| |.||..|||.||| |.|||.|| |||.|
BL02706___ybc 1 ATGTTTAGCACTTGGAAAATTT----------ATCTTTTA-----GCAAT 35
BSNT_00999___ 45 CGGATTGGTTGAGTTAATTGTGG-GGGGAATTCTTCCTCAGATCGCAAAT 93
| .|.|||| ||.||| .|||| ||||||| |.|.||
BL02706___ybc 36 C-------ATCAGTT--TTTTGGTAGGGA------CCTCAGA--GTACAT 68
BSNT_00999___ 94 GATTT-AGACATTT-------------CCA-----------------TTG 112
.|||| .|..|||| ||| |.|
BL02706___ybc 69 CATTTCCGGTATTTTGGATCAGATCGCCCACACACTCGGGATAACTTTAG 118
BSNT_00999___ 113 TTTCAGCCGGACAGCTGATCAGTGTGTTTGCGCTGGGATATGCAGT---- 158
.|.||||.||.|||||.||.|...|.|||.|.||||..|||||.||
BL02706___ybc 119 CTGCAGCGGGGCAGCTCATTACGATCTTTTCACTGGTGTATGCTGTTTTC 168
BSNT_00999___ 159 ATCTGGGCCGCTGCTTTTGGCATTGACTGCAAGGATTGA---GCGGAAGC 205
|.| |||.|.||..||||.|||||.|||||.||.|| |||.|||
BL02706___ybc 169 ACC----CCGGTCCTGATGGCGTTGACGGCAAGTATGGATAGGCGCAAG- 213
BSNT_00999___ 206 GCTTA--TATCTAATTGCTTT--ATTTGTTT-----------TCTTCCTT 240
||| .||.|| ||||.| .||||||| |.|| ||
BL02706___ybc 214 --TTAATGATGTA--TGCTCTCGGTTTGTTTGTGATAGGAAATATT--TT 257
BSNT_00999___ 241 AGCAATCTTATC--GCCTACTTCAGCCCTAAT----------TTCGCAAC 278
.|| |.|||.| ||||..|| || || |||.|
BL02706___ybc 258 GGC--TTTTACCCTGCCTGGTT--------ATGGTTGGTTTGTT-GCAGC 296
BSNT_00999___ 279 ACTGATGGTATC--TAGGGTATTGGCGGCGATGAGTACAGGGCTGATTGT 326
.| ||.|| ||.||..||||.|| ||||..||.||||
BL02706___ybc 297 GC-----GTGTCGTTATGGCTTTGGGGG---------CAGGCATGGTTGT 332
BSNT_00999___ 327 TGT----GCTTTCTTTAACGATTGCCCCGAAAATTGTTGCGCCTG--AAT 370
.|| | |.||||||||||||.|.||.||.|...||.|.| ||
BL02706___ybc 333 GGTCACGG----CCTTAACGATTGCCGCCAAGATCGCACCGGCGGGTAA- 377
BSNT_00999___ 371 ACAGAGCCCGCGCAATCGGAATTATTTTTATGGGTTTCAGCTCTGCTATC 420
.||| |.|.|.|||||.|..|...|..|.|||||.||.|.|.||.||.|
BL02706___ybc 378 GCAG-GGCAGTGCAATTGCTACAGTCGTCATGGGGTTTACCGCTTCTTT- 425
BSNT_00999___ 421 GCAT--TAGGTGTGCCGCTCGGAATCTTAAT--CAGC-GATTCCTTCGGG 465
.|| |||||||.||.||||||| .||| |.|| ||..|.||.|||
BL02706___ybc 426 -GATTATAGGTGTTCCACTCGGAA---GAATGACGGCAGAAGCATTAGGG 471
BSNT_00999___ 466 TGG-----CGGATTTTG-----TTCCTTGGCATCGGCCTGTTGGCGCTGA 505
||| .|.||||.| ||.||| |.||||...|.|
BL02706___ybc 472 TGGAAGTCTGTATTTGGGGGAATTGCTT----------TATTGGGATTCA 511
BSNT_00999___ 506 TCTCCATGCTGATTATTTCAATCTT--CTTTGAAAGAATAC---CGGCGG 550
||.|.| |||||.||..|.|||| |.||| ..|.|||| .||||
BL02706___ybc 512 TCGCAA---TGATTGTTCTATTCTTAACATTG-CCGCATACTGAAGGCG- 556
BSNT_00999___ 551 AAAAAATGA-----TTCCTTTCCGGGAACAGC---------TCAAGACGA 586
||.| |.|||||.|...|.|||| |.|||
BL02706___ybc 557 -----ATAAGCCCGTCCCTTTGCTTCAGCAGCTTTCCCTTTTAAAG---- 597
BSNT_00999___ 587 TCGGTAATCTGAAAATCGCGA----GTTCACACCTC-GTCACGATGTTTA 631
||.|.||||.|.|||| ||| .|| ||||| |.|||.
BL02706___ybc 598 -----AAACGGAAAGTAGCGATGGGGTT-----ATCGGTCAC--TTTTTT 635
BSNT_00999___ 632 CATTAGCT-GGCCACTACACGCT-TTACGCT-----TACTT-TGCGCCGT 673
| |.||| || |.|.| ||.||.| ||||| | |.||
BL02706___ybc 636 C--TGGCTCGG-------AGGATATTCCGTTGCATATACTTAT---CTGT 673
BSNT_00999___ 674 TTTTAGAAGAGACTCTTCAC---CTGAGCTCTTTCTGGG-TCAGC----A 715
|||.|.|| |||| |..||||.||| ||||| |
BL02706___ybc 674 ------------CTCCTTACCTTCTGA-CCGTTTCAGGGATCAGCGGCAA 710
BSNT_00999___ 716 TTTGTT--------ATTTCCT----TTTCGGGATATCTGCC--------- 744
||||.| .|||.|| ||| ||| ||| |||
BL02706___ybc 711 TTTGCTCAGCGGCGTTTTGCTTATATTT--GGA-ATC-GCCAGCTTGGTT 756
BSNT_00999___ 745 GTATGCGGAGGCCCTTTCGGAGGAGCGCTAT----CTGACCGGCTTGGTT 790
|.|| ||.|| ||.||.||| ||| ||||
BL02706___ybc 757 GGAT-CGAAG-----TTTGGCGGA----TATAGCACTGA----------- 785
BSNT_00999___ 791 CCTTTAAGAGCATTTTGCTGGTGACCGGTTCCTTTGCCATCATTATGTTC 840
||| .|||.|| ||||||| |||.|.||
BL02706___ybc 786 ----TAA----------ATGGGGA---GTTCCTT--------TTACGCTC 810
BSNT_00999___ 841 TT-------ACTGCCGCTGTCTA-CATCGTCTATGATTTTCTTTTTGCCT 882
.| | ||.|||||..|| ||||| |..|||||||..|.|.||.|
BL02706___ybc 811 GTTGGCGGGA-TGGCGCTGCATATCATCG-CACTGATTTTGCTGTCGCTT 858
BSNT_00999___ 883 GTCA---------------------TGGTGAT-------TTGGGGTC-TT 903
|||| ||.|||| ||..|||| ||
BL02706___ybc 859 GTCACCCATTCCTATGTCGGAGTACTGTTGATTCTCATATTATGGTCGTT 908
BSNT_00999___ 904 CTGAGCTGGA--GCCT--CGCCCCGGCTCAGCAAAGCTAT---TTA---- 942
| ||.|.| |.|| ||.||||.|.|||||| ||| |||
BL02706___ybc 909 C---GCCGCATGGTCTACCGGCCCGACGCAGCAA---TATCACTTAGCGA 952
BSNT_00999___ 943 --ATTGA-----AATTG-CACCTG-ATTCGTCTGACATTCAGCAAAGCTT 983
.|||| ||||| ||..|| |||..|| |.|||..|.||
BL02706___ybc 953 CGCTTGAACCCGAATTGTCAGGTGTATTGCTC-GGCATCAATCA------ 995
BSNT_00999___ 984 TAACACATCGGCCCTCCAAGTCGGAATTGCCCTTGGCTCAGCCATTGGCG 1033
||||....|.|||.|||..||.|||...||..|||..||.||.|
BL02706___ybc 996 ------ATCGATGATGCAATTCGCCATGGCCGCAGGTGCAGGAATCGGAG 1039
BSNT_00999___ 1034 GTGTTGTTTTGGATCAAACGGGTACTGTGGTGTCAACAGCATGG--TGCG 1081
|..| |||||.|..|||.|.|| |..|||..||.|...|.||| ||.|
BL02706___ybc 1040 GGAT--TTTTGTAGAAAAAGTGT-CGCTGGCTTCTATTACGTGGTTTGGG 1086
BSNT_00999___ 1082 GC-----GGGTCA--ATTGTGATCATCGCTGTCCTGTT-TGCTTTCATTT 1123
|| ||||.| ||||.||| ||| |||| |
BL02706___ybc 1087 GCATTGGGGGTTATGATTGCGAT------TGT--TGTTGT---------- 1118
BSNT_00999___ 1124 CTTTAACAAGACCT---GTTCA--GACAGCAAAAAAATCCTCCTTGTAA- 1167
|||.|| ||||| ||||| ||.||||..| |.|||||
BL02706___ybc 1119 -TTTGAC--GACCTTCAGTTCACGGAAAGCAGCA--------CATGTAAG 1157
BSNT_00999___ 1167 ---------------- 1167
BL02706___ybc 1158 AGAAATCAGTTCATAA 1173
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