Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04655 and BL02547
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:48
# Commandline: needle
# -asequence dna-align/BSNT_04655___mrpD.1.5803.seq
# -bsequence dna-align/BL02547___mrpD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04655___mrpD-BL02547___mrpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04655___mrpD-BL02547___mrpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04655___mrpD
# 2: BL02547___mrpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1547
# Identity: 1070/1547 (69.2%)
# Similarity: 1070/1547 (69.2%)
# Gaps: 124/1547 ( 8.0%)
# Score: 3529.0
#
#
#=======================================
BSNT_04655___ 1 ATGATCAACATGAATAATTTTGTTATTTTGCCAATCCTGATCCCGCTTT- 49
|||||||||.||||.|||.|||||||.|||||.| ||||
BL02547___mrp 1 ---------ATGAATAATCTTGTAATTCTGCCAATACTGATTC--CTTTA 39
BSNT_04655___ 50 -TGTCGGCTATTCTTCTGATTTTCATGA------CGAAGAACCTTATGCT 92
||.|.||.|||||.||.||.||.|||| ||| |..||||
BL02547___mrp 40 ATGGCCGCAATTCTGCTTATCTTTATGAACAGGTCGA------TCGTGCT 83
BSNT_04655___ 93 CATGAGAATCTTCAGCACGGCGGCATCGGCCAT--CGG-GATTG-TGATT 138
.|||.|....|||||| ||...|||..|||| ||| |||.| |
BL02547___mrp 84 GATGCGTGCATTCAGC---GCCATATCTTCCATTGCGGCGATCGCT---- 126
BSNT_04655___ 139 AGCGG----CATACTTGTACAGACTGTCTTCACAAAAGGTATCCAGACAC 184
|||| |.|.|||||.|||||.||||..||..|.||.||||||||
BL02547___mrp 127 -GCGGCCGCCGTTCTTGTGCAGACAGTCTATACGGACGGAATCCAGAC-- 173
BSNT_04655___ 185 TCAGCT------TAGGCGGCTGGAAAGCGCCGTACGGCATTGTGCTTGCC 228
|| |.|||||.|||||..|.||||.|||.||....||||.|
BL02547___mrp 174 ----CTTGTATCTCGGCGGGTGGAAGCCTCCGTTCGGAATCAGCCTTGTC 219
BSNT_04655___ 229 GCAGACCAATTCGCCAGCCTGCT--CGTTCTCACAACAGCGATCATCGGT 276
||.||.|||||.||||||||.|| ||| |.||.|||||.||.|||||.
BL02547___mrp 220 GCTGATCAATTTGCCAGCCTTCTGGCGT--TAACGACAGCCATTATCGGA 267
BSNT_04655___ 277 TTATT---GGTTGGGCTTTATTCCTTCCGTTCTGTCGGTGAAAAACGGGA 323
||..| |||| ||||||||.||.||.||..||||.||||||||.||
BL02547___mrp 268 TTTCTGACGGTT---CTTTATTCGTTTCGCTCCATCGGCGAAAAACGCGA 314
BSNT_04655___ 324 GCGCTCCTTTTACTACTCCGGCGTTCAGTTCTTGCTTGCCGGCGTCAGCG 373
|||.|.||||||.||..|||.|||.||||||.||||||||||.||.||||
BL02547___mrp 315 GCGTTTCTTTTATTATCCCGCCGTCCAGTTCCTGCTTGCCGGAGTTAGCG 364
BSNT_04655___ 374 GAGCGTTTTTAACAGGCGATTTATTTAATATGTACGTATTTTTTGAGCTT 423
|.||.||.||.||.||.||.||.|||||..|||.|||||||||||||.|.
BL02547___mrp 365 GCGCTTTCTTGACCGGGGACTTGTTTAACCTGTTCGTATTTTTTGAGGTG 414
BSNT_04655___ 424 CTGCTTATTGCTTCCTATATGCTGATTGTATTAGGCGGTACAAAAATTCA 473
||.||.||.|||||.|||.|||||||.||..|.|||||.||.||.|||||
BL02547___mrp 415 CTTCTGATGGCTTCGTATGTGCTGATCGTCATCGGCGGCACGAAGATTCA 464
BSNT_04655___ 474 GCTGCTGGAATCCCTTAAATATATCGTGTTTAATATCGTATCGTCTGCCC 523
|||||.|||.||.||.||.||.|||||.|||||.||..|.||.||.||||
BL02547___mrp 465 GCTGCGGGAGTCTCTGAAGTACATCGTCTTTAACATTATTTCTTCCGCCC 514
BSNT_04655___ 524 TGTTTGTCATAGGGGTCGGCTT-TTTATACGCTGTAACCGGCACGTTAAA 572
|.||||||||.||.||| |||| ||||||.||.||.||.|||||.|||||
BL02547___mrp 515 TCTTTGTCATCGGAGTC-GCTTATTTATATGCGGTTACGGGCACATTAAA 563
BSNT_04655___ 573 CATGGCGGATCTTAGCGTGAAAATCAGCGAAACAGGACAAACCGGGCTGA 622
||||||||||||.|||||....|||||||||.||||.|||||||||||||
BL02547___mrp 564 CATGGCGGATCTGAGCGTCCGGATCAGCGAATCAGGGCAAACCGGGCTGA 613
BSNT_04655___ 623 TCACTGTGATTGGTGTCCTGATGCTTTTG---GTATTTGGCATGAAGGGC 669
||||.||.||.|.||| .|.|| ||||| ||.||.||..|.||.|||
BL02547___mrp 614 TCACGGTCATCGCTGT-TTTAT--TTTTGATCGTCTTCGGTTTAAAAGGC 660
BSNT_04655___ 670 GGAATCTTCCCCCTCTACTTTTGGCTTCCAGGCTCTTATTACGCGCCACC 719
||.||||||||.||.||.||.|||.|.||.||.||.|||||.|||||.||
BL02547___mrp 661 GGCATCTTCCCGCTGTATTTCTGGATGCCTGGTTCCTATTATGCGCCGCC 710
BSNT_04655___ 720 GGCGGCAATCTCCGCGTTGTTCGGCGCTTTGCTGACAAAAGTCGGGTTAT 769
.||.||..|.|||||..||||.|||||..|.|||||.||||||||..|.|
BL02547___mrp 711 AGCCGCTGTTTCCGCACTGTTTGGCGCACTTCTGACCAAAGTCGGCCTGT 760
BSNT_04655___ 770 ATTCGATTGCGAGGGTTTTCACATTGATTTTTATTCACGATACAGCCTTT 819
|..||||..|.|||||.||.|||||.|||||.|..||.||..|.||.|||
BL02547___mrp 761 ACGCGATCACAAGGGTGTTTACATTAATTTTCACCCAAGACGCCGCTTTT 810
BSNT_04655___ 820 ACCCATCAGCTGATGATTTGGCTGGCGGCGCTGACTGTGATTTTCGGTGT 869
||.|||||..|.|||.|.|||||.||||||||.||..|.||.|||||.||
BL02547___mrp 811 ACTCATCAATTAATGGTCTGGCTTGCGGCGCTTACGATCATCTTCGGGGT 860
BSNT_04655___ 870 GATCGGTTCACTCGCTTATTCGAATG-TCATGAAAATTGTGATCTATAAC 918
.|||||.||..||||.||.|.|.||| ||| .|||||..|.|||||.||.
BL02547___mrp 861 CATCGGCTCGATCGCCTACTGGGATGTTCA-AAAAATCATCATCTACAAT 909
BSNT_04655___ 919 ATTATTACCGCTGTCGGCGTGATTTTGTTCGGTGTAGCAGTACACACCCC 968
|||.|.||.||.||||||||.||.||||||||..|.||.|...|.||.||
BL02547___mrp 910 ATTGTCACTGCGGTCGGCGTCATCTTGTTCGGCATCGCCGCCAATACGCC 959
BSNT_04655___ 969 CGCATCCATTCAGGGCGCGATCTACTATCTGATTCACGATATGCTGATTA 1018
.||.||.||..|.||..|..||||||||.|||||||.||.|||.|.||||
BL02547___mrp 960 GGCTTCAATCGAAGGATCTGTCTACTATTTGATTCATGACATGATCATTA 1009
BSNT_04655___ 1019 AGGGCGCTTTGTTTATGC-TGGCGGGTA-CGCTGATCGCATTGACTGG-- 1064
|.||.||..||||||||| |||||| | ||||..|.||..||||.||
BL02547___mrp 1010 AAGGAGCGCTGTTTATGCTTGGCGG--AGCGCTTTTTGCCCTGACAGGGA 1057
BSNT_04655___ 1065 --AACTGCGAACCTGCATAAAATGGGCGGGCTGATCAAACGCTATCCTGT 1112
||| ||||||.|.||||||.||||.|||||||||..|.||||.||
BL02547___mrp 1058 CAAAC----AACCTGAAAAAAATGAGCGGCCTGATCAAAAACCATCCCGT 1103
BSNT_04655___ 1113 TCTTGGATGGATGTTTTTCATTTCTGCTATTTCTCTTGCAGGCATTCCGC 1162
.||.||.|||||||||.|.|||||.||..||||..|.|||||..||||.|
BL02547___mrp 1104 GCTCGGCTGGATGTTTATGATTTCAGCCGTTTCATTGGCAGGTGTTCCTC 1153
BSNT_04655___ 1163 CACTGAGCGGATTTGTCGGCAAATTTAAAATTGCGGAGGGCGGCTT---- 1208
|..|.||||||||..|||||||..|.||||||||.||.||||||||
BL02547___mrp 1154 CTTTCAGCGGATTCATCGGCAAGCTGAAAATTGCAGAAGGCGGCTTTTTA 1203
BSNT_04655___ 1209 --CGCAGAA--GGTGAATTTACGATATCCATGCTGATTCTGCTTTCAAGT 1254
||..||| .|||| ||||| .|||||||.||..|.||.||.
BL02547___mrp 1204 AGCGGCGAATTCGTGA--TTACG------CTGCTGATGCTTTTATCCAGC 1245
BSNT_04655___ 1255 CTGCTCGTACTGTACTCTGTGCTGAGGATCTTTATACATGCGTTTTGGGG 1304
||||||||..||||.||.||..|||..||.|||||..|.|..||.|||||
BL02547___mrp 1246 CTGCTCGTCTTGTATTCCGTCATGAAAATATTTATCAACGGCTTCTGGGG 1295
BSNT_04655___ 1305 CGAAGAAAAAGAA-------ACGCCAAAACCAAATCATCGAACAGCTAAA 1347
.||.|||.|.||| ..||||||| ..||||||||
BL02547___mrp 1296 GGATGAACAGGAAGATGCTCCGGCCAAAA-----------GGCAGCTAAA 1334
BSNT_04655___ 1348 GGACTTC-TTTATCCGGCAGCTATTTTTCTCTTGCTGTCTCTTCTCTTCG 1396
.|.||.| |.|||||||||||..|..|.|||||.|||||.|||..|.|||
BL02547___mrp 1335 AGGCTACATGTATCCGGCAGCGGTACTGCTCTTTCTGTCGCTTGCCATCG 1384
BSNT_04655___ 1397 GATTGGGTACAGAATGGGTGTCG--CCTTACGTTGATCAAGCGGCCGAGA 1444
||.|.||.||.|| |..|.||| ||.||..||.|.||.|||||.||.|
BL02547___mrp 1385 GACTCGGAACCGA--GCTTATCGCTCCGTATTTTCACCAGGCGGCTGATA 1432
BSNT_04655___ 1445 CGCTGCTGAATCCGGAAAAATATATCGAAGCTGTTCTGAAGGAGTAG 1491
||||..|.||.||.|||||||||||.|||||.|||.|||||||||||
BL02547___mrp 1433 CGCTCGTCAACCCCGAAAAATATATTGAAGCCGTTTTGAAGGAGTAG 1479
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