Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05470 and BL02476
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05470___ywtB.1.5803.seq
# -bsequence dna-align/BL02476___pgsAA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05470___ywtB-BL02476___pgsAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05470___ywtB-BL02476___pgsAA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05470___ywtB
# 2: BL02476___pgsAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity: 828/1210 (68.4%)
# Similarity: 828/1210 (68.4%)
# Gaps: 107/1210 ( 8.8%)
# Score: 2598.5
#
#
#=======================================
BSNT_05470___ 1 ATGAAAAAAGAACTGAGCTTTCATGAAAAGCTGCTAAAGCTGACAAAACA 50
|||||||||.||||||.||||||.|||||.|||||.|||.||||.||.||
BL02476___pgs 1 ATGAAAAAACAACTGAACTTTCAGGAAAAACTGCTGAAGTTGACGAAGCA 50
BSNT_05470___ 51 GCAAAAAAAGAAAACCAATAAGCACGTATTTATTGCCATT--CCGATCGT 98
|.|.|||||||||||.||.||||||||.|||||.| .||| |||.|..|
BL02476___pgs 51 GGAGAAAAAGAAAACAAACAAGCACGTCTTTATCG-TATTGCCCGTTATT 99
BSNT_05470___ 99 TTTTGTCCTT-ATGTTCG-CTTTCATGTGGGCGGGAAAAGCGGAAA---- 142
||.||| || |||||.| |||| |..||||..||||..||..|||
BL02476___pgs 100 TTCTGT--TTAATGTTTGTCTTT-ACTTGGGTCGGAAGCGCCAAAACTCC 146
BSNT_05470___ 143 --CGCCGAAGGTC-AAAACGTATTCTGACGACGTACTCTCAGCCTCATTT 189
|||..|.||.| ||||.|.| ||.|.|...||..||||..|.|||
BL02476___pgs 147 TTCGCAAATGGACAAAAAAGAA----GATGCCAAGCTTACAGCTACTTTT 192
BSNT_05470___ 190 GTAGGCGATATTATGATGGGACGCTATGTTGAAAAAGTAACGGAGCAAA- 238
||.||||||||.|||||||||.|..|.||.||||||||.| ||||
BL02476___pgs 193 GTTGGCGATATCATGATGGGAAGAAACGTAGAAAAAGTGA-----CAAAC 237
BSNT_05470___ 239 ----AAGGGGCAGACAGTATTTTTCAATATGTTGAA-CCGATCTTTAGAG 283
|.||..|.||.|||.|.||..||.||| |||| |||..|||||..|
BL02476___pgs 238 TTGCACGGTTCGGAAAGTGTCTTCAAAAATG-TGAAGCCGTACTTTAATG 286
BSNT_05470___ 284 CCTCGGATTATGTAGCAGGAAACTTTGAAAACCCGGTAACCTATCAAAAG 333
..||.||||.|.|..|||||||||||||||||||.||||||.||..||||
BL02476___pgs 287 TGTCAGATTTTATCACAGGAAACTTTGAAAACCCTGTAACCAATGCAAAG 336
BSNT_05470___ 334 AATTATAAACAAGCAGATAAAG-AGATTCATCTGCAGACGAATAAGGAAT 382
.|.|||.||.|.||||| |||| |.||.||||||||.||||||.|.||||
BL02476___pgs 337 GACTATCAAGAGGCAGA-AAAGAACATCCATCTGCAAACGAATCAAGAAT 385
BSNT_05470___ 383 CAGT-GAAAGTC-TTGAAGGATATGAATTTCACGGTTCTCAACAGCGCAA 430
|||| |||| | |||||..|..||||.||||..||.||.||....||.|
BL02476___pgs 386 CAGTCGAAA--CATTGAAAAAGCTGAACTTCAGCGTACTGAATTTTGCCA 433
BSNT_05470___ 431 ACAACCACGCAATGGATTACGGCGTTCAGGGCATGAAAGATACGCTTGGA 480
|||||||.||.|||||.|||||.|...|.||..||||.||||||||....
BL02476___pgs 434 ACAACCATGCGATGGACTACGGGGAAGACGGTTTGAAGGATACGCTCAAT 483
BSNT_05470___ 481 GAATTTGCGAAGCAAAACCTTGATATCGTTGGAGCGGG--ATACAGCTT- 527
.|||||.|.||..|.||.||.||..|.||.|||||.|| ||| |.|||
BL02476___pgs 484 AAATTTTCAAATGAGAATCTGGAGCTTGTCGGAGCAGGAAATA-ATCTTG 532
BSNT_05470___ 528 AAGTGATGCGAAAAAGAAAATTTCGTACCAGAAAGTCAACGGGGTAACGA 577
|| ||.||||||.||.|..|.||.||.|||||.||.|||||.||||..|
BL02476___pgs 533 AA--GACGCGAAACAGCACGTATCCTATCAGAATGTGAACGGCGTAAAAA 580
BSNT_05470___ 578 TTGCGACGCTTGGCTTTACCGATGTGTCCGGGAAAG--GTTTCGCGGCTA 625
||||.|||||.||.|||||.||.||.|.| ..|||| .||| .|.||.|
BL02476___pgs 581 TTGCAACGCTCGGTTTTACAGACGTCTAC-ACAAAGAACTTT-ACAGCCA 628
BSNT_05470___ 626 AAAAGA--ATACGCCGGGCGTGCTGCC-CGCAGATCCTGAAATCTTCATC 672
|||||| |.|.|| ||.|||||||| |.||| |||..|||||||.||.
BL02476___pgs 629 AAAAGAACAGAGGC--GGAGTGCTGCCGCTCAG-TCCGAAAATCTTTATT 675
BSNT_05470___ 673 CCTATGATTTCAGAAG---CGAAAAAACATGCTGACATTGTTGTTGTGCA 719
||.||||||.|.|||| |||||||| ||.||..||||..||||.||
BL02476___pgs 676 CCAATGATTGCGGAAGCATCGAAAAAA---GCGGATCTTGTCCTTGTCCA 722
BSNT_05470___ 720 -GTCACACTGGGGCCAAGAGTATGACAATGATCCAAACGACCGCCAGCGC 768
|| .||||||||.|||||.|||||||||||.||.||||||.|.|||...
BL02476___pgs 723 TGT-GCACTGGGGACAAGAATATGACAATGAACCGAACGACAGACAGAAG 771
BSNT_05470___ 769 CAGCTTG-CAAGAGCCATGTCTGATGCGGGAGCTGACATCATCGTCGGCC 817
.|.||.| |||| ||.||..|.|||||.|||||.||..|||||.|||||.
BL02476___pgs 772 GATCTGGCCAAG-GCGATTGCAGATGCCGGAGCAGATGTCATCATCGGCG 820
BSNT_05470___ 818 ATCATCCGCACGTCTTAGAACCGATTGAAGTATATAACGGAACCGTCATT 867
.||||||.||.||..|.||||||||.|||||.||||||||.||.||.|||
BL02476___pgs 821 CTCATCCCCATGTTCTCGAACCGATCGAAGTGTATAACGGTACTGTGATT 870
BSNT_05470___ 868 TTCTACAGCCTCGGCAACTTTGTCTTTGACCAAGGCTGGACGAGAACAAG 917
|||||||||||||||||||||||.|||||.||.||||||.|.||||||.|
BL02476___pgs 871 TTCTACAGCCTCGGCAACTTTGTATTTGATCAGGGCTGGTCAAGAACACG 920
BSNT_05470___ 918 AGACAGTGCACTGGTTCAGTATCACCTGAAGAAAAATGGAACAGGCCGCT 967
.|||||.||.||.||.||.||.||..|.|.|||..|.||.|.|||.||||
BL02476___pgs 921 GGACAGCGCGCTTGTACAATACCATTTAATGAATGACGGCAAAGGGCGCT 970
BSNT_05470___ 968 TTGAAGTGACACCGATCGATATCCATGAAGCGACACCTGCACCTGTGAAA 1017
||||.||.||.||..||.|.||.|..|||||.||.||..|.|||.|
BL02476___pgs 971 TTGAGGTAACGCCTCTCAACATTCGCGAAGCAACGCCGACGCCTTT---- 1016
BSNT_05470___ 1018 AAAG---ACAGC-----CTTAAACAGAAAACCATTATTCGCG--AACTGA 1057
|| |.||| ||||||..|||||.|..|.||| || ||.|||
BL02476___pgs 1017 --AGGCAAGAGCGACTTCTTAAAACGAAAAGCGATCTTC-CGTCAATTGA 1063
BSNT_05470___ 1058 CGAAAGACTCTAATTTCGCTTGGAAAGTAGAAGACGGAAAACTGACGTTT 1107
|.||||...|.||..|||..|||||||.|||..||||||||.|.||||||
BL02476___pgs 1064 CAAAAGGAACAAACCTCGACTGGAAAGAAGAGAACGGAAAATTAACGTTT 1113
BSNT_05470___ 1108 GATATTGATCATAGTGACAAACT--AAAATCTAAATAA------------ 1143
||..|.||||||...|||||.|| ||||| |||||
BL02476___pgs 1114 GAAGTCGATCATGCGGACAAGCTGAAAAAT---AATAAAAACGGAGTGGT 1160
BSNT_05470___ 1143 ---------- 1143
BL02476___pgs 1161 GAACAAATGA 1170
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