Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03555 and BL02454

See Amino acid alignment / Visit BSNT_03555 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:33
# Commandline: needle
#    -asequence dna-align/BSNT_03555___yqjF.1.5803.seq
#    -bsequence dna-align/BL02454___yqjF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03555___yqjF-BL02454___yqjF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03555___yqjF-BL02454___yqjF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03555___yqjF
# 2: BL02454___yqjF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     497/826 (60.2%)
# Similarity:   497/826 (60.2%)
# Gaps:         185/826 (22.4%)
# Score: 1446.0
# 
#
#=======================================

BSNT_03555___      1 TTGACGGAACACTTTCAGCA----AAAAAACATTTCT-------------     33
                                        |    ||||||.|.||||             
BL02454___yqj      1 -------------------ATGATAAAAAATACTTCTCACCGCCCTTTTC     31

BSNT_03555___     34 --ATACCTGAAGGAATCTGGATCATGAGACAAACCTGGAATGATGTCTTA     81
                       .|.|||||||||...|||||.||||..|||||.||||||.||||.|||
BL02454___yqj     32 CACTGCCTGAAGGACCGTGGATGATGACGCAAACATGGAATCATGTATTA     81

BSNT_03555___     82 TTTGCTCACTGGCCTGTTGATGTTTCT--ATCC-TTCGCGCTTTGG----    124
                     |||||.||.|||.||||.||   |.||  |.|| |||||     ||    
BL02454___yqj     82 TTTGCCCATTGGGCTGTCGA---TCCTGAAGCCATTCGC-----GGACAA    123

BSNT_03555___    125 -TACCGTCTGTTTTAGAATTAGATACATATAACGGGCAAGCTTGGATCAG    173
                      |||||.|.|..||.|||||.||.||||..|||||..||||.||||||.|
BL02454___yqj    124 ATACCGGCGGCCTTGGAATTGGAGACATTCAACGGAAAAGCGTGGATCGG    173

BSNT_03555___    174 TATGCTT-CCCTTTATGCTCACGAACCTGAGGGCGCGTTATCTTCCTGCC    222
                     ||| ||| ||.|||.||||.||.||..||.|..|.|||| |.||.|.|||
BL02454___yqj    174 TAT-CTTGCCTTTTCTGCTGACAAATATGCGTCCCCGTT-TTTTGCCGCC    221

BSNT_03555___    223 ATTCCCGGTGCGCGT--GC--ATTTCCTGAGCTTAACCTCCGCACCTATG    268
                     .||.||..|   |.|  ||  ||||||.|||||.||..||||.||.||||
BL02454___yqj    222 CTTTCCTTT---CATCAGCAGATTTCCCGAGCTGAATGTCCGGACATATG    268

BSNT_03555___    269 TCACGTATAAAGGCAAGCCCGGCATTTATTTTTTTAG-CTTAGATGCCGA    317
                     |..|.|||||||||...||.||||||||||||||.|| ||| ||.|||| 
BL02454___yqj    269 TAGCATATAAAGGCGTCCCGGGCATTTATTTTTTCAGTCTT-GACGCCG-    316

BSNT_03555___    318 TCATCG-GC-TGGCCGCCCTTGGCGCTCGCACATTCTTTCATCTGCCTTA    365
                      |.||| || ||||||.|...|||||.|||.||.|.||.||..|||||||
BL02454___yqj    317 -CTTCGCGCTTGGCCGTCGCCGGCGCGCGCTCAATGTTCCACTTGCCTTA    365

BSNT_03555___    366 TTTTTACGCGGATATGAAAGCCGAAAAAAACGGTGATG-GCATTGACTAT    414
                     |||||||||                     ||| |||| ||.||      
BL02454___yqj    366 TTTTTACGC---------------------CGG-GATGCGCTTT------    387

BSNT_03555___    415 GTCAGCA-AACGGAAAGA-----------TGACAA---------------    437
                         ||| |||..|||||           ||||||               
BL02454___yqj    388 ----GCACAACATAAAGACCGCTTTCAGCTGACAAGCAGGAGAAAACGTT    433

BSNT_03555___    438 -AGAAGCAGCATTCCACGCCGCAT----ACCGGCCCATTTCAGCTCCTTT    482
                      |.||||||..||..|.||.|.||    |||||    ||||.|..|||||
BL02454___yqj    434 CACAAGCAGAGTTTTATGCAGAATATCAACCGG----TTTCGGAGCCTTT    479

BSNT_03555___    483 TACAGCAGA-AAAGGATTCGCTCGATTACTGGCTGACAGAACGGTATAGA    531
                     ..||||.|| |||||| .||||.||.||||||||..|.|||.||||..|.
BL02454___yqj    480 CTCAGCTGATAAAGGA-ACGCTTGAATACTGGCTTGCTGAAAGGTACCGT    528

BSNT_03555___    532 CTCTATACTACCAATCAAAACAAACTCTATTACGAAGACATCCATCATCA    581
                     .|.||.||.||..||.|||||.|.||||||||.|||||.|||   ||.||
BL02454___yqj    529 TTGTACACCACGCATAAAAACGAGCTCTATTATGAAGATATC---CACCA    575

BSNT_03555___    582 TCCA---TGGCTGCTGCAAAACGCTGAAGCGGAAATTTCAGTCAATACGG    628
                     |.||   ||||.||||||..|.||||||||.||.||||            
BL02454___yqj    576 TTCAGAGTGGCAGCTGCAGCAGGCTGAAGCTGATATTT------------    613

BSNT_03555___    629 TGACTGAT--GCTCAC---GGCA-------TTACATTGCCAGAGTCAG-A    665
                     |..|.|||  ||||||   .|||       |.|||.|.|||||..|.| .
BL02454___yqj    614 TTCCGGATCCGCTCACAAGCGCAAACGATCTCACACTCCCAGACACCGCG    663

BSNT_03555___    666 CCCCTTGCTTCATTACGCTAAAAAACAGGATGTGTTATTTTGGCCGCT--    713
                     |||||| ||||||||.||.||||..|||.|.||.||||||||||||||  
BL02454___yqj    664 CCCCTT-CTTCATTATGCAAAAAGGCAGCACGTCTTATTTTGGCCGCTGA    712

BSNT_03555___    714 -----TAGGAAA-TGGAG----CTAA    729
                          |.||||| ||.||    .|||
BL02454___yqj    713 AAAAGTGGGAAAGTGAAGAAACATAA    738


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03555 and BL02454

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
