Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05478 and BL02440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05478___rbsD.1.5803.seq
# -bsequence dna-align/BL02440___rbsD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05478___rbsD-BL02440___rbsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05478___rbsD-BL02440___rbsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05478___rbsD
# 2: BL02440___rbsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 431
# Identity: 276/431 (64.0%)
# Similarity: 276/431 (64.0%)
# Gaps: 70/431 (16.2%)
# Score: 815.0
#
#
#=======================================
BSNT_05478___ 1 ATGAAAAAACACGGTATACTGAACAGCCATCTTGCCAAGATT-TTAGCAG 49
||||||||||||||.|||.|.|||||||||.|.| |||.||| .|.||.|
BL02440___rbs 1 ATGAAAAAACACGGAATATTAAACAGCCATATCG-CAAAATTGCTGGCCG 49
BSNT_05478___ 50 ACCTTGGCCACACTGATAAAATTGTCATCGCGGATGCCGGACTGCCGGTT 99
|.||.||.||.||.||||..||.|||||||||||.|||||.|||||.|||
BL02440___rbs 50 ATCTCGGGCATACCGATACCATCGTCATCGCGGACGCCGGTCTGCCCGTT 99
BSNT_05478___ 100 CCCGACGGCGTTTTGAAAATTGATCTTTCACTGAAGCCGGGCCTT----- 144
||...||||||....|||||.|||||..|||||| |.||
BL02440___rbs 100 CCGCCCGGCGTCCCCAAAATCGATCTCGCACTGA-------CATTGGGTA 142
BSNT_05478___ 145 ---CCGGCTTTCCAAGA---TAC--AGCGGCAGTACTGGCTGAGGAAATG 186
||||.||| |.||| ||| ||| |..|.||.||.||||||
BL02440___rbs 143 CGCCCGGATTT-CGAGAGGTTACAAAGC-----TCATCGCCGATGAAATG 186
BSNT_05478___ 187 GCGGTCGAAAAAGTCATTGCTGCAGC---TGAAATA-AAAGCATCCAAT- 231
|..|||||||||||.| |.||||| .|||||| |||||.| ||||
BL02440___rbs 187 GTTGTCGAAAAAGTGA---CGGCAGCCCAAGAAATAGAAAGCGT-CAATC 232
BSNT_05478___ 232 CAGGAGAATGCGAGATTTCTAGAAAATC----TTTTCTCTGAA--CAAGA 275
|.||..|| ||...||||.| ||||.| ||||| || |||.|
BL02440___rbs 233 CCGGTCAA-GCCGCATTTTT--AAAAGCGGAATTTTC----AAACCAAAA 275
BSNT_05478___ 276 GATTGAATACCTTTCTCACGAGGAGTTTAAGCTGCTGACAAAAG------ 319
||||||.||..|..|.|||||.|..||.| |||||
BL02440___rbs 276 GATTGACTATATCCCGCACGAAGCATTCA----------AAAAGGCAACG 315
BSNT_05478___ 320 ----AAGCAAAGGCAGTCATAAGAACAGGAGAATTCACACAGTATGCCAA 365
|.||.||.||.|||||..|.|||||.|||...||.|..|||||.||
BL02440___rbs 316 AGCCAGGCGAAAGCGGTCATTCGCACAGGGGAAGCAACGCCTTATGCAAA 365
BSNT_05478___ 366 CTGCATCCTGCAGGCGGGTGTGCTTTTCTAG 396
.||||||.||||.|||||.|||.|.||.|||
BL02440___rbs 366 TTGCATCTTGCACGCGGGAGTGATCTTTTAG 396
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