Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03463 and BL01890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03463___ribE.1.5803.seq
# -bsequence dna-align/BL01890___ribE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03463___ribE-BL01890___ribE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03463___ribE-BL01890___ribE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03463___ribE
# 2: BL01890___ribE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 684
# Identity: 467/684 (68.3%)
# Similarity: 467/684 (68.3%)
# Gaps: 72/684 (10.5%)
# Score: 1481.5
#
#
#=======================================
BSNT_03463___ 1 ATGTTTACAGGAATTATCGAAGAAACAGGCACAA---TCGAATCCATGAA 47
|||||||||||.||.||.||||||...||.||.| |.|| ||||||
BL01890___rib 1 ATGTTTACAGGCATCATTGAAGAAGTCGGAACGATTTTGGA---CATGAA 47
BSNT_03463___ 48 AAAAGCAGG--GCATTCAATGGCCTTAACAATTAAATGC-TCAAAGATTT 94
|||.||.|| || .|.|||.|.|||...|||.|||.| .||||| |..
BL01890___rib 48 AAAGGCGGGAAGC--GCCATGTCTTTAGTCATTCAATCCAACAAAG-TGA 94
BSNT_03463___ 95 TAGAGGATGTTCATCTTGGCGACAGCATTGCAGTGAACGGCATTTGTTTG 144
|.||.|||||..|.||.||||||||||||||.||.|||||..|.||..||
BL01890___rib 95 TCGAAGATGTGAAGCTCGGCGACAGCATTGCTGTCAACGGAGTCTGCCTG 144
BSNT_03463___ 145 ACGGTCACTGATTT---TACAAAAAATCAATTCACAGTGGATGTTATGCC 191
||.||.|.|||.|| |.|.|..|.| |||||.|.||||||.||||.
BL01890___rib 145 ACCGTAAATGAGTTCGGTTCCAGCAGT---TTCACGGCGGATGTCATGCT 191
BSNT_03463___ 192 TGAAACAGTCAAAGCTACGTCACT--GAATGATTTAACAAAAGGAAGCAA 239
||||||..|.|||||.||.||||| |.| .|||.|| ||||||||||..
BL01890___rib 192 TGAAACGCTGAAAGCAACATCACTCGGCA-CATTGAA-AAAAGGAAGCCG 239
BSNT_03463___ 240 AGTAAATCTGGAAAGAGCGATGGCGGCAAACGGCCGTTTCGGAGGCCATT 289
.||.|||||.|||.|.||||||||||||||||||||.|||||.||.|||.
BL01890___rib 240 CGTCAATCTTGAACGGGCGATGGCGGCAAACGGCCGCTTCGGCGGGCATA 289
BSNT_03463___ 290 TCGTCTCAGGCCATGTCGACGGAACTGCGGAAATCACACGAATTGAAGAG 339
|.||.||.||.|||||||||||.|||||....|||...||.||.||
BL01890___rib 290 TGGTGTCGGGGCATGTCGACGGCACTGCATCGATCGTTCGCATAGA---- 335
BSNT_03463___ 340 AAAAGC----AACGCAGTTTACTATGATTTAAAAATGGACCCGTCATTAA 385
|||||| |||.|.||.|||||||||||||||.|.|||||.|||.|..
BL01890___rib 336 AAAAGCGGCAAACACCGTATACTATGATTTAAAACTTGACCCTTCACTGG 385
BSNT_03463___ 386 CAAAAACATTGGTTTTAAAGGGATCAATTACTGTGGATGGCGTGAGCTTA 435
|.||||...|.||.|||||.||.||.||..|.||.||.|||||.|||.|.
BL01890___rib 386 CCAAAATGCTTGTGTTAAAAGGTTCGATCGCCGTAGACGGCGTCAGCCTC 435
BSNT_03463___ 436 ACCATATTCGGCCTGACAGAAGA-CACAGTGACGATCTC-CTTAATACCG 483
|||||||||||.|||||.||.|| || .||.||..|||| ||| ||.|||
BL01890___rib 436 ACCATATTCGGACTGACGGAGGATCA-GGTAACAGTCTCGCTT-ATCCCG 483
BSNT_03463___ 484 CATAC----GATCAGCGAAACGATCTTTTCAGAAAAAACGATCGGCTCTA 529
||.|| ||| ||||||||.|||.|.|.|||||.|.||||
BL01890___rib 484 CACACATTGGAT----GAAACGATTTTTCCTGCAAAAAAGGTCGG----- 524
BSNT_03463___ 530 AA-----GTGAATATCGAATGCGATATGATCGGAAAATATATGTATCGAT 574
|| ||.||.|||||.||||||||||||||.|||||.||.||.||.|
BL01890___rib 525 AAGCATCGTCAACATCGAGTGCGATATGATCGGCAAATACATTTACCGCT 574
BSNT_03463___ 575 TTTTGCATAAAGCCAATGAAAATAAGACCCAACAAAC---------CATT 615
||.|.|| ||||..||||.||| |.|||| ||||
BL01890___rib 575 TTCTCCA-----CCAAACAAAACAAG-----AAAAACAGGCACAGGCATT 614
BSNT_03463___ 616 -ACAAAAGCCTTCTTAAGCGAAAACGGCTTTTAG 648
||..||||.|||||.|..||||||||.|||||.
BL01890___rib 615 GACTGAAGCATTCTTTAAAGAAAACGGGTTTTAA 648
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