Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03453 and BL01884
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence dna-align/BSNT_03453___ypuI.1.5803.seq
# -bsequence dna-align/BL01884.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03453___ypuI-BL01884.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03453___ypuI-BL01884.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03453___ypuI
# 2: BL01884
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity: 319/595 (53.6%)
# Similarity: 319/595 (53.6%)
# Gaps: 158/595 (26.6%)
# Score: 835.0
#
#
#=======================================
BSNT_03453___ 1 ATGAAAGAAGCAAAATGTGAGAGACAAAGACATGAGGGGAAGATACCAAA 50
BL01884 0 -------------------------------------------------- 0
BSNT_03453___ 51 CGAAATGGGACATTCGATTGTGCGAGCGCAGACTCAAAAAACAGGCGAAT 100
||||||.|.||.||.|...||||.||.||..|..|..|||||||||
BL01884 1 ----ATGGGAAAATCTATGGCAAGAGCCCAAACCGAGCAGGCAGGCGAAT 46
BSNT_03453___ 101 TCTTATCA---ATGGTTGTCA-ATACCGTGAACGATTACCTAAATCAAAC 146
|.|||.|| |..|| ||| |..|.||| ||||||..||||..||||
BL01884 47 TTTTAGCACAGACCGT--TCAGACGCTGTG--CGATTATTTAAACGAAAC 92
BSNT_03453___ 147 GACGCTTGAGTCCTTACAGGCTGAATTGCCTATTGAAAAAG-GA-TACTG 194
|||||||...|||.|..|.||.|||..||| ..|.|.||| || ||.|.
BL01884 93 GACGCTTTCATCCCTTGAAGCCGAAGAGCC--CGGGAGAAGAGATTATTA 140
BSNT_03453___ 195 CTGTGATGTGCTGAGC-ACTCTGAGAAGAATGGCAGTATTTTGTGAAGGA 243
..|.|||||.||.||| ||| ||||||.|.||||.||.|..|||||||.|
BL01884 141 TCGCGATGTCCTCAGCAACT-TGAGAAAACTGGCGGTTTACTGTGAAGAA 189
BSNT_03453___ 244 GGCGCAGAAGCGTG----CCGCCGTCTC---CTGATGCAGGAGCCTTTTC 286
|| ||.|| |.||||..|| |||..||||||.|||||||
BL01884 190 GG-------GCTTGCGGCCTGCCGAATCAGGCTGCAGCAGGATCCTTTTC 232
BSNT_03453___ 287 AGGAAGCCAGAGCGGAAAAAACACTTTATAATGTGTATCACCAATGCATT 336
||||.||...|||.||||..||.||.|||.|.||.|||||.|.||||||.
BL01884 233 AGGAGGCTGCAGCCGAAAGGACGCTCTATCAGGTCTATCATCGATGCATA 282
BSNT_03453___ 337 GAAGAGTTCTTTATGCCGAAAAAAGACACGTGGTGTGAAAATAGCCGGGC 386
|||||.||.||||..|||||||||||.||.||||..|||.|.|||.|.||
BL01884 283 GAAGAATTTTTTACACCGAAAAAAGATACTTGGTACGAAGACAGCAGAGC 332
BSNT_03453___ 387 GTCTTATACCGGGGTCAGCGCAATTGAGTTTTATCATGCTGTT------C 430
|.|.||.||.||....|.|||.||| |||| || |
BL01884 333 GGCCTACACGGGAAAAAACGCCATT-----------TGCT-TTCACGAAC 370
BSNT_03453___ 431 CTGCGTCG-----CTTGAGCAATTATTATTGCCGTTGAGCGCGGCCTTTC 475
|.|||.|| .||.|..||| ||||..|| |||
BL01884 371 CAGCGCCGGCCTCATTAAAAAAT-----------TTGATGGC-----TTC 404
BSNT_03453___ 476 ---TGAA--------------GATGAGGGAAGAGCTGGCTCATTACGAAG 508
|||| ||||||.|||||..||| |.|||.|.|
BL01884 405 GCTTGAAACAGGATATCAATCGATGAGAGAAGAATTGG---AATACTATG 451
BSNT_03453___ 509 CGTC-------CGGATCAAGCATGG---CGCCAATCAGATAA--- 540
||.| ||.||.||| |||| .||| .||||.|
BL01884 452 CGACTGACTATCGAATGAAG-ATGGTTCAGCC---GAGATCATAG 492
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