Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00665 and BL01849
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_00665___yclI.1.5803.seq
# -bsequence dna-align/BL01849___yclI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00665___yclI-BL01849___yclI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00665___yclI-BL01849___yclI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00665___yclI
# 2: BL01849___yclI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1536
# Identity: 1031/1536 (67.1%)
# Similarity: 1031/1536 (67.1%)
# Gaps: 171/1536 (11.1%)
# Score: 3249.0
#
#
#=======================================
BSNT_00665___ 1 ATGAACTTTATCAAACGGGCCTTTTGGAATATGAAGGCTAAAAAGGGAAA 50
|||||.|||.|||||||.||||||||||..|||||.||.|||||.|||||
BL01849___ycl 1 ATGAATTTTTTCAAACGAGCCTTTTGGAGCATGAAAGCGAAAAAAGGAAA 50
BSNT_00665___ 51 AACGTTATTGCAATTATTTGTGTTTACAGTCATATGTGTCTTTGTTCTAT 100
|||..|.||.|||||.|||||.||.||..|.||.||.||..|.||.||..
BL01849___ycl 51 AACACTTTTACAATTGTTTGTTTTCACGATGATTTGCGTGCTCGTGCTGA 100
BSNT_00665___ 101 CAGGCCTCACCATCCAGTCGGCAGCACAAAAGTCAAGCGAACTGGCCAGA 150
||||..|.||.||||||||||||||....||.||.|||||||||||.||
BL01849___ycl 101 CAGGAATTACGATCCAGTCGGCAGCCGTGAAATCGAGCGAACTGGCGAG- 149
BSNT_00665___ 151 CAGGAA---CTCGGCGGAAGCGTGACACTTCAGGTTGACCGCCAAAAGCA 197
|||| |||||.||.|||||.||.||..|.||||||.|..||| |
BL01849___ycl 150 --GGAACAGCTCGGAGGCAGCGTCACGCTCAAAGTTGACAGGGAAA---A 194
BSNT_00665___ 198 AATG--GAAA-AACAGCAGGACAGCGGTGA----AAAACGCAGCTTCAAA 240
|||| |||| |||||||||||...||.|| ||| ||.||..||
BL01849___ycl 195 AATGATGAAAGAACAGCAGGACTCAGGAGACCGGAAA----AGGTTTGAA 240
BSNT_00665___ 241 TCAACAC------CGATCAAAGTGTCTGATGCGAATAAGCTTGC-AGCGC 283
||.||.| |..||||| || .||..|.||.||||| ||| |
BL01849___ycl 241 TCGACCCCCGTTTCTCTCAAA---TC---AGCCGAGAAACTTGCGAGC-C 283
BSNT_00665___ 284 TTGACCATGTGAAGAGCTACAATTACA------CCACATCAGCTTCAGCC 327
||.|||||||.||.|||||.||.|.|| |.|||||.||||.|||
BL01849___ycl 284 TTTACCATGTCAAAAGCTATAACTTCATCTCCTCAACATCTGCTTTAGC- 332
BSNT_00665___ 328 AACGCGGGA-AACTTTGATGCGATTGAAAGCTCTAGTTCAAGTGATTCCA 376
||| |||||.|||.||||.|||||| .||||
BL01849___ycl 333 ------GGACAACTTCGATCCGATCGAAAGC---------GGTGA----- 362
BSNT_00665___ 377 GCTCCAGCAGTTCAA---GCTCAAAC-GCTAAAAACAGCCAAGGC----- 417
|.||.| ||||| .||||||| || .|.||||| |||
BL01849___ycl 363 ---CGAGGA-TTCAACGGACTCAAACAGC---GATCAGCC--GGCCGGAT 403
BSNT_00665___ 418 --GGCGG------ACAAGGCGGACCGCAAATGGTTCAAGCCGATCTTTCG 459
||||| |||.|||||.|.|||||||.|.||.||.||..|.||.
BL01849___ycl 404 CGGGCGGCAATGAACAGGGCGGCCGGCAAATGATGCAGGCTGACGTATCA 453
BSNT_00665___ 460 ATTGAAGGTGTCATCAGCACAGCGTTAGTCGATGATTTCTCTGACGGAGA 509
||.||||||||.|..||||||||..|.|||||.||.||..|.||||| ||
BL01849___ycl 454 ATCGAAGGTGTGACAAGCACAGCCCTCGTCGACGAATTTGCCGACGG-GA 502
BSNT_00665___ 510 -TTCAAAAATCACAGACGGACGCGCGATTACAAA--ATCAGATGTCGGCA 556
.||.||.|||||.||.||.||.||..|.||||| || ||||| |.|
BL01849___ycl 503 CGTCCAAGATCACGGAAGGCCGTGCTTTAACAAAGGAT--GATGT--GAA 548
BSNT_00665___ 557 --AAAAAGTAACAGTGATCAACGAAACTTTAGCGGAAGAAAATGATTTGA 604
|||||||..|.|||||..|.|||||..|.||.||||||||.||..|||
BL01849___ycl 549 TGAAAAAGTCGCCGTGATTGAAGAAACGCTTGCCGAAGAAAACGAGCTGA 598
BSNT_00665___ 605 GCGTTGGCGATTCGATCACAATTGAATC-AGCAACAGATGAAGATACGAC 653
..||.||||||.||||||.|.|..||.| ||||.| |||||||||.|.||
BL01849___ycl 599 AGGTCGGCGATACGATCAAAGTCAAAGCGAGCAGC-GATGAAGATGCAAC 647
BSNT_00665___ 654 GGTAAAGCTGAAGATCGTCGGTATTTATAAAACAACATCTTCAGGCGATG 703
|.|.||..|.||.||||||||.||.||||||||.||.||.||.||.||..
BL01849___ycl 648 GATCAATTTAAAAATCGTCGGAATCTATAAAACGACTTCATCCGGAGACA 697
BSNT_00665___ 704 ACCAAGCCCAAAATTTCTCTTTCTTAAACCCTTATAACAAGCTTTATACG 753
|.|||||.|||||.|||.|.||.|||||||||||||||||..|.|||||.
BL01849___ycl 698 ATCAAGCGCAAAACTTCGCCTTTTTAAACCCTTATAACAAAATCTATACA 747
BSNT_00665___ 754 CCTTACACAGCAACAGCGGCGCTGAAAGGCGACGACTATAAAAATACGAT 803
||.||.||.||..||.||||..|.|||||||||||.|||.||||..||||
BL01849___ycl 748 CCATATACGGCGGCATCGGCCTTAAAAGGCGACGATTATCAAAACGCGAT 797
BSNT_00665___ 804 TGACTCAGCTGTTTACTATATGGACGACGCGAAAAATATGGATGCTTTCG 853
.||...|||.||.|||.|||||||||||||....||.||.||.||||||.
BL01849___ycl 798 AGATGAAGCGGTCTACAATATGGACGACGCCTCCAACATCGACGCTTTCA 847
BSNT_00665___ 854 TAAAAGCAGCGAAGAAAACATCAATAGACTTCGATACGTACACACTGAAT 903
|....||.||.|||||||||...||.||.||.|||||.|.||||.||.|.
BL01849___ycl 848 TTGCGGCTGCCAAGAAAACAGGCATTGATTTGGATACATTCACATTGGAC 897
BSNT_00665___ 904 ACAAACGATCAGCTTTACCAGCAAATGGTCGGACCGATTGAAAATGTGGC 953
.|.||.||.|||.|.||||||||.||||||||.||||||||||||||.||
BL01849___ycl 898 GCCAATGACCAGTTGTACCAGCAGATGGTCGGCCCGATTGAAAATGTCGC 947
BSNT_00665___ 954 TTCTTTCTCTAAAAACGTGGTGTATCTTGTATCAGTGGCAGGCGCCGTCA 1003
.||.|||||.|||||.||.||.||||||||..|.||.||.||.||.||.|
BL01849___ycl 948 CTCCTTCTCGAAAAATGTCGTCTATCTTGTCACGGTCGCCGGGGCGGTGA 997
BSNT_00665___ 1004 TTCTTGGCCTGATTGTCATGATGTCAATCAGGGAGCGCAAATACGAAATG 1053
||||.||.|||||.|||||||||||||||||||||.|.||||||||||||
BL01849___ycl 998 TTCTCGGACTGATCGTCATGATGTCAATCAGGGAGAGAAAATACGAAATG 1047
BSNT_00665___ 1054 GGCGTGTTAATGGCCATCGGTGAAAAACGATGGAAATTGATTGGACAGTT 1103
||.||..|.|||||.|||||.||||||||..|||||.|.||.||||||||
BL01849___ycl 1048 GGTGTTCTGATGGCGATCGGCGAAAAACGCCGGAAACTCATCGGACAGTT 1097
BSNT_00665___ 1104 CTTGACTGAGATTCTGATTG-TGGCCGTTATCGCTATCGGCCTTGCATCT 1152
.||.||.|| |.|||.|.|| |.||.||..|.||.|||||..|..||.|.
BL01849___ycl 1098 TTTAACCGA-AATCTTAATGATCGCAGTGCTTGCCATCGGGATCTCAGCA 1146
BSNT_00665___ 1153 GTGACGGGAAATCTCGTCGCAAATCAGCTTGGAAATCAGCTTTTATCCCA 1202
.|.||.||.|..||..|.|||||.||..|.||.||.|||||.||...|||
BL01849___ycl 1147 TTAACCGGCAGCCTGATTGCAAAGCAAATCGGGAACCAGCTCTTGAGCCA 1196
BSNT_00665___ 1203 GCAAATCAGTTCATCAACCGATTCAACGCAAACC-----GCAAGCGGACA 1247
||||||| .|.|||.|| ||| ||.|.|| |||.|||||..
BL01849___ycl 1197 GCAAATC----GAACAAACG--TCA--GCTAGCCAGTCTGCAGGCGGAAT 1238
BSNT_00665___ 1248 AATG---CCCGGCGGCGGTGGCGGCATGGGCGG-CAAA---------ATG 1284
.||| ||.||||||||.|||..|.| ||| |||| |.|
BL01849___ycl 1239 GATGGGCCCAGGCGGCGGAGGCTTCTT---CGGACAAAGTACTGCTCAAG 1285
BSNT_00665___ 1285 T-TCGGCCACAGTTCATCAAACG-TGGACGTTATCGATTCACTGAACGTC 1332
| ||.|||| ||.|||| | |.||| |||||
BL01849___ycl 1286 TCTCAGCCA---TTGATCA---GCTCGAC-------ATTCA--------- 1313
BSNT_00665___ 1333 GCGGTTTCTAT---GAACGACATGCTTATT----CTGGGCGGGATCGGCA 1375
.||.||..| ||| ||||.| ||.|||||.||||||.
BL01849___ycl 1314 --AGTATCCTTCGGGAA-------CTTAATGGCACTTGGCGGAATCGGCC 1354
BSNT_00665___ 1376 TCCTAATCGCAATCATTGCAACATTGCTGCCGTCAATTTCAGTACTGCGG 1425
|..||||.||.||..|.||.|||.|.||.|||||.||.||.||..|..||
BL01849___ycl 1355 TTTTAATTGCGATGTTCGCGACACTCCTTCCGTCCATATCTGTTTTAAGG 1404
BSNT_00665___ 1426 CTTCATCCGAAAACGATATTGACAAAACAGGAATAG 1461
||.||||||||||||||.||.||||||||.||||||
BL01849___ycl 1405 CTCCATCCGAAAACGATTTTAACAAAACAAGAATAG 1440
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