Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00584 and BL01812
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00584___nasA.1.5803.seq
# -bsequence dna-align/BL01812___nasA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00584___nasA-BL01812___nasA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00584___nasA-BL01812___nasA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00584___nasA
# 2: BL01812___nasA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1293
# Identity: 857/1293 (66.3%)
# Similarity: 857/1293 (66.3%)
# Gaps: 174/1293 (13.5%)
# Score: 2666.0
#
#
#=======================================
BSNT_00584___ 1 ATGAAGCTGTCGGAACTGAAAACTAGCGGTCATCCACTCACGTTGCTCTG 50
.||||..||.||||..|||..|..||||| .|||.|.|.||.|| ||
BL01812___nas 1 TTGAAATTGGCGGATTTGAGGAAGAGCGG----ACACGCGCCTTCCT-TG 45
BSNT_00584___ 51 T-----TCCTTTTTATACTTTGATGTCAGTTTTATGATATGGGTTATGCT 95
| ||.||||||||.||.||||||||.||||||||.|||||..||||
BL01812___nas 46 TTGTCATCTTTTTTATATTTCGATGTCAGCTTTATGATTTGGGTGTTGCT 95
BSNT_00584___ 96 TGGGGCGCTGGGTGTTTATATTTCTCAGGATTTTGGCCTGTCTCCTT--- 142
.||||||||.|||||||||.||.|....|||||||...|.||.||||
BL01812___nas 96 GGGGGCGCTTGGTGTTTATGTTACGGCTGATTTTGATTTATCGCCTTCAC 145
BSNT_00584___ 143 --------TTGAGAAAGGGCTTGTCGTAGCTGTGCCGATTTTATCTGGAT 184
|||| ||||| ||..|.||.|.|||..|.||||
BL01812___nas 146 AGGTCGGATTGA--------TTGTC---GCCATACCTACTTTGGCCGGAT 184
BSNT_00584___ 185 CTGTGTTTCGTATC--ATT---CTTGGTATTTTAACGGACAGAATCGGAC 229
| ||.|||| | ||| ||.||.||||||||.|||.|..||||||
BL01812___nas 185 C-GTTTTTC----CGGATTGCGCTCGGCATTTTAACCGACCGTTTCGGAC 229
BSNT_00584___ 230 CGAAAAAAACGGCAGTGATCGGGATGCTGGTGACGATGATTCCGCTGCTT 279
|||||||.|||||.||...|||.|||||||||||||||||||||.||.|.
BL01812___nas 230 CGAAAAAGACGGCTGTTGGCGGAATGCTGGTGACGATGATTCCGTTGTTA 279
BSNT_00584___ 280 TGGGG--GACA-TTCGG-----CGGCCGTTCCCTGACTGAGCTGTATGCC 321
||||| |.|| ||||| |||.|| |.|||||||||..|
BL01812___nas 280 TGGGGATGGCAGTTCGGTTCATCGGTCG--------CCGAGCTGTATATC 321
BSNT_00584___ 322 ATCGGGATTCTGCTTGGCGTGGCGGGAGCAAGCTTTGCTGTAGCGCTGCC 371
|||||.|||.|.||.||.|||||.||.|||||||||.|.|...|.||.||
BL01812___nas 322 ATCGGAATTTTACTCGGTGTGGCAGGCGCAAGCTTTTCCGCTTCCCTTCC 371
BSNT_00584___ 372 TATGGCCAGCCGATGGTATCCGCCTCATTTGCAGGGGCTTGCGATGGGGA 421
||||||.|||||.|||||||||||.||.|||||.||.|||||.|||||||
BL01812___nas 372 TATGGCGAGCCGCTGGTATCCGCCGCACTTGCAAGGTCTTGCCATGGGGA 421
BSNT_00584___ 422 TTGCCGGAGCGGGGAACAGCGGCACGTTGTTTGCAACCCTGTTTGGCCCT 471
|.|||||.|||||.||||||||.||..||.||||.||.||.||.||||||
BL01812___nas 422 TCGCCGGGGCGGGAAACAGCGGAACACTGCTTGCTACGCTATTCGGCCCT 471
BSNT_00584___ 472 CGTCTGGCGGAGCAGTTCGGCTGGCACATTGTCATGGGAATTGCGCTAAT 521
||.||.||||||||..|.||||||.||...|||||||||.|.|||||.||
BL01812___nas 472 CGCCTTGCGGAGCAAGTGGGCTGGAACGGCGTCATGGGACTGGCGCTGAT 521
BSNT_00584___ 522 TCCATTATTGATCGTCTTTATT---CTTTTTGTATCC--ATGGC-AAAGG 565
|||.|||....|||| .||||| ||.|| ||| ||||| ||||.
BL01812___nas 522 TCCTTTAACCCTCGT-GTTATTCAGCTATT----TCCTTATGGCTAAAGA 566
BSNT_00584___ 566 ATTCCCCTGCA-CAGCCGTCTCCCCAGCCGCTCAAAAGCTA-TCTGCATG 613
| ||.|.|.| ||||||.||||..|.|||||||||..||| |.||| .|
BL01812___nas 567 A--CCTCCGAATCAGCCGGCTCCTAAACCGCTCAAAGACTATTTTGC-CG 613
BSNT_00584___ 614 TGTTCGGGCAAAAGGAAACATGGTTTTTCTGCCTGCTGTACAGCGTCACA 663
|.|||....|||.|||.||.||||.|||.|||||.||.||||||||.|||
BL01812___nas 614 TTTTCAAAGAAAGGGACACTTGGTATTTTTGCCTTCTCTACAGCGTGACA 663
BSNT_00584___ 664 TTTGGCGGATTTGTCGGGCTCTCAAGCTTTTT-ATCTATTTTCTTTGTTG 712
||.||.||.||||||||.||.||.|.|||||| |.||| ||||.|||
BL01812___nas 664 TTCGGGGGTTTTGTCGGCCTGTCCAACTTTTTAAGCTA----CTTTTTTG 709
BSNT_00584___ 713 -AT--CAATA-------CCAGCTGTCAAAAATTCACGCAGGGGACTTCGT 752
|| ||.|| ||.||.||.|.| ||.||.||.||.||
BL01812___nas 710 CATCCCAGTATGCCGTTCCGGCGGTAAGA-------GCCGGCGAATTTGT 752
BSNT_00584___ 753 TACATTATGT-GTGGCGGCGGGGAGCTTTTTCCGGCCTGTCGGGGGCTTG 801
.||..| ||| ||.||..|.||.||||...||||.||||||||.||.|||
BL01812___nas 753 CACGCT-TGTCGTTGCATCCGGAAGCTGCCTCCGCCCTGTCGGCGGATTG 801
BSNT_00584___ 802 ATTTCGGATCGTGTCGGCGGCACGAAAGTTCTTTCTG-------TACTGT 844
|||.|.|||....|||||||| ||.|.|| || |.||.|
BL01812___nas 802 ATTGCCGATAAAATCGGCGGC------GTGCGTT-TGCTTCAATTCCTCT 844
BSNT_00584___ 845 TTGTCATCGTGGCACTGTGTATGGCCGGAGTCAGCAGCCTGCCATCTCTT 894
||.||...|||||.|||||.|||..|...|||||.|..||.||.|||||
BL01812___nas 845 TTATCGGAGTGGCTCTGTGCATGTTCTCGGTCAGTATGCTCCCGTCTCT- 893
BSNT_00584___ 895 TCAATGGTTATTGTTCT---------ATTGTTTGTCGGAATGATGG--GG 933
.|| .|||.| |||.|||.||||.||| || |.
BL01812___nas 894 ----AGG----CGTTGTCACAGCCGCATTATTTATCGGCATG--GGCTGC 933
BSNT_00584___ 934 CTCGGAATGGGAAACGGCGCAGTATTCCAGCTCGTGCCGCAGCGTTTTCG 983
|||||||||||.||||||||..||||||||.|.||.||||||||.||||.
BL01812___nas 934 CTCGGAATGGGGAACGGCGCGATATTCCAGTTTGTACCGCAGCGATTTCA 983
BSNT_00584___ 984 CAAAGAAATTGGCATGGTGACGGGAATCGTCGGTGCGGCCGGAGGAATCG 1033
..||||.||.||.|||||||||||.||||||||.||.||.||.|||||||
BL01812___nas 984 ACAAGAGATCGGGATGGTGACGGGGATCGTCGGCGCTGCGGGGGGAATCG 1033
BSNT_00584___ 1034 GAGGGTTTTTCCTGCCGAACATCTTAGGATCTCTCAAACAGATGACAGGC 1083
|.||.||.|||||.|||||.|||.|.|||.|.||.||.||.||.|||||.
BL01812___nas 1034 GCGGATTCTTCCTTCCGAATATCCTCGGAACGCTGAAGCAAATTACAGGT 1083
BSNT_00584___ 1084 ACATATGCTATCGGTTTTATCACGTTTTCCTGTATCGC-------GCTGC 1126
||.|||.|.|.|||.||..|.||.|||.||..|||.|| || ||
BL01812___nas 1084 ACGTATTCAAGCGGGTTCCTAACCTTTACCGTTATTGCATTTTTAGC-GC 1132
BSNT_00584___ 1127 TGGCGTTTGCACTTGTGCTTGCCGCAGGCTATTACTGGCGG-----AAAA 1171
|.| ||.|| |||.||.||| |.||||| ||| ||||
BL01812___nas 1133 TCG-GTCTG--CTTTTGTTTG-CTCAGGC---------CGGATGGAAAAA 1169
BSNT_00584___ 1172 GC--TGG--AGCGCG----GAAAGCAGCCCGGCGGATGTTTAG 1206
.| ||| ||| || ||||.||..|| ||..||.|
BL01812___nas 1170 ACAGTGGAAAGC-CGAGGAGAAATCAATCC----GAATTTAA- 1206
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