Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03666 and BL01550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_03666___yqhH.1.5803.seq
# -bsequence dna-align/BL01550___yqhH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03666___yqhH-BL01550___yqhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03666___yqhH-BL01550___yqhH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03666___yqhH
# 2: BL01550___yqhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1749
# Identity: 1270/1749 (72.6%)
# Similarity: 1270/1749 (72.6%)
# Gaps: 144/1749 ( 8.2%)
# Score: 4530.0
#
#
#=======================================
BSNT_03666___ 1 ATGAATACAGAAATGATC--TACGATGCAA--AATGGCCTGAAGAATTTG 46
||||...||||.|| || |.||| ||| |||||||.|||.|.||
BL01550___yqh 1 ATGAGACCAGACAT--TCATTTCGA--CAACGAATGGCCGGAACAGTT-- 44
BSNT_03666___ 47 CTGAAAGAC----TGAAAAACGATGGCCCTTGGGCAAACTGGGAACTGTA 92
|..|||| | |||..|| ||.|||||.|||||.||.|||||.||.||
BL01550___yqh 45 CAAAAAG-CATCTTGATGAA-GACGGCCCGTGGGCGAATTGGGAGCTTTA 92
BSNT_03666___ 93 CAAGCTCT-CTGCAGAAATCCAGAAAACATTAGCAATTCCAGA-TTTTGA 140
|.||||.| ||| .|||.|.|||||||...|.||.||||| || .|||||
BL01550___yqh 93 CCAGCTTTCCTG-TGAAGTGCAGAAAAGGCTTGCGATTCC-GACGTTTGA 140
BSNT_03666___ 141 AGGCTTACGGGCTCCTTTATATCTGCCTTC----CTTTACGCCGCTCCCC 186
||||||.|.|||.|| ||| |..|||.| |||.||.|||||.|||
BL01550___yqh 141 AGGCTTGCAGGCCCC---ATA-CCACCTCCCCGGCTTCACACCGCTTCCC 186
BSNT_03666___ 187 CACCAGCTTGAAGTGGCGCAAAAAGTGGTTGAAAAAATGAACGGGAAAGC 236
||||||||.|||||.||.|..||.|||||.|||.|.||||||||.|||||
BL01550___yqh 187 CACCAGCTCGAAGTCGCCCGGAAGGTGGTCGAACAGATGAACGGAAAAGC 236
BSNT_03666___ 237 GATTTTAGCAGATGAGGTTGGTCTCGGGAAAACGGTTGAAGCTGGACTGA 286
.||.||.||.|||||.||.||.|||||.|||||.||.||.||.||.||||
BL01550___yqh 237 CATCTTGGCGGATGAAGTGGGCCTCGGCAAAACAGTCGAGGCGGGGCTGA 286
BSNT_03666___ 287 TTCTAAAAGAATATATGATTCGCGGGTTAGCAAAAAAAATTTTGATCCTT 336
|..||||||||||.||||||||||||.|.||.||.|||||.||.||||||
BL01550___yqh 287 TATTAAAAGAATACATGATTCGCGGGCTGGCCAAGAAAATATTAATCCTT 336
BSNT_03666___ 337 GTGCCCGCTTCACTTGTGTCACAGTGGGTCAAAGAGCTTCAGGAAAAATT 386
||.|||||.||.||.||.||.||.|||||.||.||.||||.||||||.||
BL01550___yqh 337 GTCCCCGCCTCGCTCGTCTCGCAATGGGTAAAGGAACTTCGGGAAAAGTT 386
BSNT_03666___ 387 TTTGATTCCGGCTGTTGAACAAAAGAAAAGCTATGTGTGGGAGCAATGCG 436
|||.||||||||.||||||||.||.|||||||||||.|||||||||||||
BL01550___yqh 387 TTTAATTCCGGCCGTTGAACAGAAAAAAAGCTATGTATGGGAGCAATGCG 436
BSNT_03666___ 437 ATATTGTCGTCTCATCAATAGACACCGCGAAGCGCTCGCCCCATCGAGAA 486
||.||||||||||.||..|.|||||.||.|||||.|||||.||..||||.
BL01550___yqh 437 ATGTTGTCGTCTCCTCCCTTGACACGGCAAAGCGGTCGCCGCACAGAGAG 486
BSNT_03666___ 487 ATCGTTCTGTCTATCCCATATGATCTTGTCATTATTGATGAGGCACACAA 536
|..|||.||||.||||..||.|||.|.||.|||||||||||.||.|||||
BL01550___yqh 487 ACGGTTTTGTCGATCCAGTACGATGTGGTGATTATTGATGAAGCTCACAA 536
BSNT_03666___ 537 ACTGAAAAATAGCAAAACGAAGAACTATGAATTTGTCCGGAATCTCGTA- 585
|||||||||.|..|||||.||.||.||.||.||||||||.| .|.||
BL01550___yqh 537 ACTGAAAAACAATAAAACAAAAAATTACGAGTTTGTCCGCA---GCTTAA 583
BSNT_03666___ 586 --AAAAAATATTGCCTGCTTCTTACCGCGACGCCAATCCAGAACCGTATC 633
||||||||.||.|||.|.||.||.||||||||.|||||.|||...|||
BL01550___yqh 584 AGAAAAAATACTGTCTGATGCTGACGGCGACGCCGATCCAAAACAAGATC 633
BSNT_03666___ 634 GAAGAGATTTTCAATTTGGTGTCCTTATTAAAACCCGGCCATTTAGGCAG 683
||.||.||.||.|||.|.||.|||.|..||||||||||.||.||.||.|.
BL01550___yqh 634 GACGAAATATTTAATCTCGTCTCCCTGCTAAAACCCGGACACTTGGGAAA 683
BSNT_03666___ 684 TCAGAATCACTTTCAGGAGGAGTTCGCCAAGA-----------AGA--AA 720
|.| ||.||..|||| .|.|||| ||| ||
BL01550___yqh 684 TGA-AAGCAACTTCA----------ACAAAGATTATACAAAACAGATCAA 722
BSNT_03666___ 721 TCCAGTTTAGAAGCGCATGAACATTTAAAAGATCTTGTGAATAAAGTCAT 770
|.|||.| |||||.||.||.|..||.||....|||.|.|||||||||||
BL01550___yqh 723 TTCAGCT--GAAGCACACGAGCGCTTGAAGTCCCTTATCAATAAAGTCAT 770
BSNT_03666___ 771 GATCCGTAACAGGCGGCATGATACCGGGCTGAATTGGAAACAGCGCCATG 820
||||.|.||||||||||||||||||||..|.|..||||.|.||||.||||
BL01550___yqh 771 GATCAGAAACAGGCGGCATGATACCGGCATCACCTGGACAAAGCGTCATG 820
BSNT_03666___ 821 TTGAAACAGTGCCGATTGAATTTTCTCCATCAGAGCAGGCGCTTTATGAT 870
|.|||||.|||||.|||...|||||.||..||||.|||||..|.|||||.
BL01550___yqh 821 TCGAAACCGTGCCTATTTCCTTTTCGCCTACAGAACAGGCTTTGTATGAC 870
BSNT_03666___ 871 GAAATT-----TCTCGTTTGAAG-GAAAGTATCA--ATAAACCAGCCAGC 912
||.||| .| ||||| .|||..|||| || .||.|.|||
BL01550___yqh 871 GAGATTAAAAAGC-----TGAAGACAAATCATCAGCAT---TCATCAAGC 912
BSNT_03666___ 913 ATGTTCTCGATTATGACCTTGCAAAGAGAATGCTGTTCGAGCAGAGAAGC 962
||||||||.||.|||||.|||.|..|.|||||||||||.|||||.||.||
BL01550___yqh 913 ATGTTCTCAATCATGACATTGGAGCGCGAATGCTGTTCAAGCAGGGAGGC 962
BSNT_03666___ 963 GGTGTATATGACGCTGAAAAAGATGCTTGATCAAAAAGA----GAAAC-- 1006
.||.|||||||||||||||||.||||||||.|.|||.|| |||.|
BL01550___yqh 963 TGTCTATATGACGCTGAAAAACATGCTTGACCGAAAGGACCGCGAAGCGC 1012
BSNT_03666___ 1007 ----AA-----GCACCTGCCATTGATGAGGATACGATTTCAGTTTTAATA 1047
|| |.|||||.||| ..||.||||
BL01550___yqh 1013 CGGTAATCTCTGAACCTGTCAT--------CCACCATTT----------- 1043
BSNT_03666___ 1048 GATCGAATTAA--TCAA----GTGACACAAAACTCTAAAGCGCTTCAAGT 1091
||||||| || |||| ||..|||||||.||.||||||||..||||
BL01550___yqh 1044 GATCGAA--AAGGTCAACGAGGTCGCACAAAATTCAAAAGCGCTGAAAGT 1091
BSNT_03666___ 1092 TGTTGATTTGA-TCAAAAAGATCGACGATAAGGTCATCATTTTTACAGAA 1140
.|||||..|.| ||||.|| .||||.||.||.||||||||.|||||.|||
BL01550___yqh 1092 CGTTGAACTCATTCAAGAA-CTCGATGACAAAGTCATCATCTTTACCGAA 1140
BSNT_03666___ 1141 TACCGTGCAACTCAGATTTATCTGCAGTGGTTTCTTCAGCAAAACGGCAT 1190
|||.|.||.||.||||||||||||||.|||||.||.|||||.||||||||
BL01550___yqh 1141 TACAGGGCGACGCAGATTTATCTGCAATGGTTCCTCCAGCAGAACGGCAT 1190
BSNT_03666___ 1191 CAGTTCTGTGCCGTTTAGAGGCGGATTTAAACGTGGGAAAAAAGACTGGA 1240
||||||.||.|||||.|||||||||||||||.|.||.||.||||||||||
BL01550___yqh 1191 CAGTTCCGTACCGTTCAGAGGCGGATTTAAAAGAGGAAAGAAAGACTGGA 1240
BSNT_03666___ 1241 TGAAGGATCTTTTCCGCGGAAAAATCCAAGTCCTTATTGCAACTGAAGCA 1290
||||.|||.|.|||.|.||.|||.|.|||||.||.||.||.|||||||||
BL01550___yqh 1241 TGAAAGATTTGTTCAGGGGCAAAGTGCAAGTTCTGATCGCGACTGAAGCA 1290
BSNT_03666___ 1291 GGCGGTGAGGGAATTAACCTGCAATTTTGCAATCACATGATCAACTATGA 1340
|||||.||.|||||.|||||.||||||||||||.|.||.|||||||||||
BL01550___yqh 1291 GGCGGCGAAGGAATCAACCTTCAATTTTGCAATAAAATCATCAACTATGA 1340
BSNT_03666___ 1341 CCTGCCATGGAATCCGATGCGACTTGAGCAAAGAATCGGAAGAATTCACA 1390
|||.||.|||||.||||||||.||.||.|||||||||||.||.||||||.
BL01550___yqh 1341 CCTTCCGTGGAACCCGATGCGCCTCGAACAAAGAATCGGCAGGATTCACC 1390
BSNT_03666___ 1391 GACTCGGGCAGGAGCGTGACGTGCACATTTATAACATGGCAACAAAACAT 1440
|.|||||.|||||.||.||.||..|||||||.||.|||||||||||.|||
BL01550___yqh 1391 GGCTCGGCCAGGAACGCGATGTCTACATTTACAATATGGCAACAAAGCAT 1440
BSNT_03666___ 1441 ACGGTGGAAGAGCATATTCTAAAGCTTTTATATGAAAAAATTCATTTGTT 1490
||.||.|||||.||||||.||||||||.|.||||||||.|||||||||||
BL01550___yqh 1441 ACCGTAGAAGAACATATTTTAAAGCTTCTTTATGAAAAGATTCATTTGTT 1490
BSNT_03666___ 1491 TGAAAAAGTGGTCGGCGAACTT-GATGATATTTTAACGAAAATTCAAGTG 1539
.||||||||.|||||.| |||| ||||||||||||||.|||||..|.||.
BL01550___yqh 1491 CGAAAAAGTCGTCGGAG-ACTTGGATGATATTTTAACAAAAATCGAGGTC 1539
BSNT_03666___ 1540 AACAATTTTGAAGAGCACCTTCATGACATTTTGTATCACTCAGCAACAGA 1589
..||||||||||||||||||.||.||.|||.|.|.|.||||.||.|||||
BL01550___yqh 1540 GGCAATTTTGAAGAGCACCTCCACGATATTCTTTTTTACTCTGCGACAGA 1589
BSNT_03666___ 1590 AGAAGAAATGAAAATAAAAATGGATAACTTAACCTCATTTTTGTCTT--- 1636
.||.|||||||||||.||||||||.|||||||||||.||..|.||||
BL01550___yqh 1590 CGAGGAAATGAAAATCAAAATGGAAAACTTAACCTCTTTCATCTCTTACG 1639
BSNT_03666___ 1637 ---ATAAA--------AAACAGCAGCCTGCTGAAAAAAGAGGATCTTAG 1674
||.|| |||| |.|.|..|.|.|.|||| ||.|
BL01550___yqh 1640 GAAATGAAGACGTTTCAAAC-----CATACACAGATAGGAGG--CTAA- 1680
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