Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00924 and BL01335
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00924.1.5803.seq
# -bsequence dna-align/BL01335.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00924-BL01335.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00924-BL01335.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00924
# 2: BL01335
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1883
# Identity: 822/1883 (43.7%)
# Similarity: 822/1883 (43.7%)
# Gaps: 811/1883 (43.1%)
# Score: 1380.5
#
#
#=======================================
BSNT_00924 1 ----------------------------ATGGAATTATCT-TTTCTACCT 21
.|| |||..|| |||.|.|..
BL01335 1 ATGAAGCAGTCAAGTAAACAAAAAAACTTTG--ATTCCCTGTTTATGCAC 48
BSNT_00924 22 AA----AAACA-----------CATTC----------------------- 33
|| .|||| |||.|
BL01335 49 AACGGGGAACAGGGGATCAAAGCATACCGTGACGCGGTAGAGACCGCTGT 98
BSNT_00924 34 ATAGAC--------CCTAATGGA--CATAA----------TACA------ 57
|.|||| ||.|.|||| .|||| ||||
BL01335 99 AGAGACGCTTTGGGCCGATTGGAAGAATAAATCGAAGCCCTACAGCGGGA 148
BSNT_00924 58 ------------AAT--------GAAGTAAAAAGCTTAG---TCG-ATCA 83
||| |||.|.|||||||| | ||| .|||
BL01335 149 AGATGCCGAAAGAATTGGATCTCGAAATCAAAAGCTT-GTTTTCGTTTCA 197
BSNT_00924 84 ATTAGC--------------CGGATTAGTTATTGAACATTC--------- 110
...||| ||||| |||.||||.|| ||
BL01335 198 GGAAGCGGGAGAATCGCTTGCGGAT--GTTCTTGAGCA-TCTGAAAGAAG 244
BSNT_00924 111 ----------------GAGTCATGCTG------CAAAGAGAG----ACA- 133
||.|||||.|| ||||..|.| |||
BL01335 245 CCTATTTGCCGCACCGGATTCATGTTGAAGATCCAAAATGCGCCGCACAC 294
BSNT_00924 134 ---CACT------------------------------------------G 138
|||| |
BL01335 295 CTGCACTGTCCGCCGCTGATCCCGGCGCTTGCTGCAGAGATGCTGATCAG 344
BSNT_00924 139 CCTGCTG----------TGGAGTCTTTTGATTATAGTGATATACCCGAA- 177
|.||||| ||||.||.||||||.|.|| ||.|
BL01335 345 CGTGCTGAATCAGTCGATGGATTCGTTTGATCAAAG---------CGGAG 385
BSNT_00924 178 -------ACTGGTATAGAAATTGAAAATATCTTGGTAAACCTGCAG-GGT 219
|.||.|..||.|| |||| ||| ||||| ||.
BL01335 386 CGGCTTCATTGATCGAGGAA--GAAA------TGG------TGCAGTGGC 421
BSNT_00924 220 ATCATCAAAAACTCAATGAATCCTCAAA--------ACCCAAGATATATG 261
.|...|.|||..| |||||.|..||| ||..||.||.||.|
BL01335 422 TTTGCCGAAAGTT---TGAATACGGAAAAGATGCTGACGGAACATTTACG 468
BSNT_00924 262 GGCCATATGGATTCAATCCCCACTCTCATTTCATGCTTGGGTGACTTCAT 311
.|| |||...| |.||.|||.|||.|||| ||| ||||.|
BL01335 469 AGC-----GGAGGGA---CACAGTCTAATTACATG---GGG---CTTCTT 504
BSNT_00924 312 AAGCAGTT--CCCTTAATAACAATATGCTAAGCCT--TGAGATGTCCCCT 357
|| ||| ||.|.|||| ||.||
BL01335 505 ------TTGGCCC-------------GCGATGCCTTCTGCGA-------- 527
BSNT_00924 358 GTTTTTTCAAA--AGTGGAAGCACAGTTACTCAAAACCATTGCCCGTATG 405
||| |||||||
BL01335 528 --------AAAGCAGTGGAA------------------------------ 539
BSNT_00924 406 TTTGGATATGATGATAAGTCAGGAGGA-GTGATGACAAGCGGCGGAAGTC 454
.|||| ||| || |||.|||| | |||...||.|||||
BL01335 540 -CTGGA----ATG-TA---CAGAAGGACG----GACTGCCGCCGGAA--- 573
BSNT_00924 455 TCGCTAA---TCTGC--ATGCACT-TACAGTAGCAAGAAATCATCAATTA 498
||.|| .|||| ||.|.|| |.|| ||| .||..|||.||.
BL01335 574 --GCGAACAGGCTGCGGATCCTCTGTTCA-----AAG-GATGCTCATTTT 615
BSNT_00924 499 AATATGAAAAAGACAGGTATC----TTCGGACTTTCTGGACAGC---CTG 541
|...||||||||.| ||..|| .||||.|| .|||.||| |.|
BL01335 616 ACCGTGAAAAAGTC-GGCTTCCCAGCTCGGCCT---CGGAGAGCGCGCCG 661
BSNT_00924 542 TCATCTTTGTTTCGGACGTCAGCCATACC--TCCCTGCACAAAGCAGCTA 589
||.|..|||| |.||||| | .||| .|||||.| |
BL01335 662 TCGTGCTTGT------------CGATACCGAT-GCTG--AAAAGCGG--A 694
BSNT_00924 590 TGATCCTAGGTTTAGGTACCTCCAGTATCATTCCGGTAAAAAGCAACAAT 639
|||.||| ||.||.|..|||||||.||
BL01335 695 TGAGCCT-----------------------TTACGATTTAAAGCAAAAA- 720
BSNT_00924 640 CTGGCCCGCATGGATATTCATGATTTAGAAATAAAAATTCATCGTGCAAA 689
.|||| |||.| ||| ||.| ||||
BL01335 721 ----ACCGC-----TATGC-TGA---AGGA----------ATCG------ 741
BSNT_00924 690 GAGTGAAGGC-CACATTCCATTTGCTGTTGTCGCAAC-TGCCGGAACAAC 737
||| .||| |||||||||..|||||||||| || ||||||.||
BL01335 742 -------GGCTTACA-TCCATTTGCGATTGTCGCAACATG-CGGAACGAC 782
BSNT_00924 738 TGTGAC--AGGAAGCATAGATCCAATTTTGCCAA--TTGCCAGAAT---- 779
.||| .||||||||.|||||..||| ||.| |||| |.||
BL01335 783 --GGACTTCGGAAGCATCGATCCGCTTT--CCGAGCTTGC--GGATGCCG 826
BSNT_00924 780 --CACAAAGGAAAACGGACTGTGGCTGCATGTAGATGCAGCATATGGCGG 827
||....|| |||.||.|||.|.||.||.|||||.|||||||||||
BL01335 827 CGCATGCTGG----CGGGCTTTGGTTCCACGTTGATGCCGCATATGGCGG 872
BSNT_00924 828 CGCTTTAATTTTTTCTGAAAAATA----TCGTGATAAACTGAGTGGTATC 873
.||.||.|||| |||..|..| .||..|||||.||..|||.|||
BL01335 873 AGCGTTGATTT----TGAGCAGGACCCGCCGCTATAAATTGGCTGGGATC 918
BSNT_00924 874 GAAATGGCTGATTCCATTACTTTTAATCCGCAAAAGTGGATGTACAT-CA 922
||.|.|||.||||| ||||.|| ||.| ||.| ||
BL01335 919 GACAGGGCCGATTC----------AATCAGC----GTCG----ACTTCCA 950
BSNT_00924 923 CAA-----------AGACCTGT--GCAATGACTCTTTT----TAAAAATC 955
||| || ||.|| ||...|.|.||||| |||||
BL01335 951 CAAGCAGTTTTATCAG-CCGGTCAGCTGCGGCGCTTTTCTTGTAAAA--- 996
BSNT_00924 956 GTGAAATACTTGAA-ACTGATTTCCG---------TATATC-TGCCCCTT 994
||.| ||| || ||||||| | |||| ||||..||
BL01335 997 --GACA-----GAAGAC--ATTTCCGCTTGATTGAT-TATCATGCCGATT 1036
BSNT_00924 995 ATATGAATGAAACTGATTTT-----ATTAATCTGGGTGAATTAGGTGTTC 1039
||.|.||| .|||| ||.||.|.|.|.|||| .||||
BL01335 1037 ATTTAAAT---CCTGA----GGAGGATGAAGCGGAGGGAAT----CGTTC 1075
BSNT_00924 1040 A--------------------AGGC-ACGCGGCATGCTGATATT------ 1062
| ||.| ||||||| ||| ||
BL01335 1076 ATCTCGTCAATAAATCGATTCAGACGACGCGGC--GCT----TTGACGCC 1119
BSNT_00924 1063 TTAAAATTATATTTATCACTTCAACACG-----TTGGAACAAAAGGATAC 1107
|||||..|.|.|.|.||.|| .|| |||| |.|.|||||
BL01335 1120 TTAAAGCTGTTTGTCTCGCT-----GCGTGTGCTTGG----AGAAGATAC 1160
BSNT_00924 1108 A----ACCAGTTGAT-------AAATAAAAGTTTCGCACT-----AAACG 1141
| .|.||.|||| |.| ||||||.| ||.||
BL01335 1161 ATTCGCCGAGATGATCGACTGGACA-------TTCGCATTGGCTGAAGCG 1203
BSNT_00924 1142 --------AAGAATGTATAGAACAAGTGAAACAGCGGCCTTTTCTTGA-- 1181
||.|||.| .|.||||.| |.||| ||| ||
BL01335 1204 GCAGCGGAAAAAATCT---CAGCAAGCG----ATCGG----TTC--GAAC 1240
BSNT_00924 1182 -GCTTTATTGTGAGCCAGATAC-AAACATCTGCTGT----TTCCGAGGTA 1225
|||..||....|.||.|| || .||| ||||| |||||..|..
BL01335 1241 TGCTGAATCCGCACCCTGA-ACTGAAC----GCTGTCGTCTTCCGCTGCC 1285
BSNT_00924 1226 TACCGC--------ATGACATTGAAAAGGATCAATGGGATAACTGGAACC 1267
| ||| |.|||...||.||.||.|..|.|.||||.||.|.||
BL01335 1286 T--CGCCTCAGAAGACGACGCGGAGAACGACCGTTTGAATAAATGTATCC 1333
BSNT_00924 1268 ---------TG----GAACTGCA---GCAGTTCTTATTG-AAAGA----- 1295
|| ||||.|.| ||.| |.||.| |||||
BL01335 1334 ACAGAGAATTGTTCAGAACGGGACAGGCGG---TGATCGCAAAGACGGCA 1380
BSNT_00924 1296 -------AGAAAATATCTTCTTGTCATTGCCG-----GAATGGAAAGGAA 1333
.|||||.||.| ||...|||..|| ||||
BL01335 1381 GCAGCTGGGAAAACATAT--TTAAAATTCACGCTGCTGAAT--------- 1419
BSNT_00924 1334 ACCGCTGGCTGCGTGCTGTGTTCCTCAATCCATTTATAACA--------- 1374
||||.|.|..| ||| ||| ..||| ||.||.|||
BL01335 1420 -CCGCGGACGAC--GCT---TTC--GGATC--TTGATGACATTCTCGGGA 1459
BSNT_00924 1375 -GGTTC----GCTTATAAAACAAATGTTCAGAAAAATAG---------AT 1410
|.||| |||| .|||.|.||.|.|..||||| |.
BL01335 1460 GGATTCAAGAGCTT-----GCAAGTCTTTATACGAATAGCAGGAGGGTAA 1504
BSNT_00924 1411 CAATTTTATGATCAATATAAACAAATTGTTTAA 1443
|| ..||||
BL01335 1505 CA---GGATGA---------------------- 1512
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