Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02646 and BL01270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_02646.1.5803.seq
# -bsequence dna-align/BL01270___fliH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02646-BL01270___fliH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02646-BL01270___fliH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02646
# 2: BL01270___fliH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 871
# Identity: 493/871 (56.6%)
# Similarity: 493/871 (56.6%)
# Gaps: 230/871 (26.4%)
# Score: 1275.5
#
#
#=======================================
BSNT_02646 1 TTGTCTAATATCATTAAACA---AGAATCATCTATTTCTCCACAAAAGGA 47
||||||||.||.|||||||| |..||||||.|| |..||
BL01270___fli 1 TTGTCTAACATTATTAAACAGCGATTATCATCAAT----------ACCGA 40
BSNT_02646 48 AAAAAGAAA-----AC--TTTCTATACAAGAGGTGCGTATTGATCATTCT 90
||||||||| || ||||..||.|.||.| |||
BL01270___fli 41 AAAAAGAAAGGCGGACGATTTCATTAAAGGAAG----------TCA---- 76
BSNT_02646 91 CACCTTTTGCAGGCTGA-AGAGAACTCGGAGGCGCTTATGGCCCGAGTGA 139
|.||| .|||| |.||||..||.| || |||
BL01270___fli 77 -AACTT------CCTGAGACAGAAACCGAA----CT-----------TGA 104
BSNT_02646 140 AAGAGGA-AGCTGA-CCGGATT------TCTGAGCAGGCAAACAGTCATA 181
.|..||| || || |||||.| || ||.||.|| |||.||..
BL01270___fli 105 TACCGGACAG--GATCCGGAATACCTCCTC-GACCATGC---CAGACAAG 148
BSNT_02646 182 TAG-----AAAATATTC----------GCCGTCAAATCGAGCAGG--AGA 214
.|| |||||||.| ||..|.||.||||.|||| |||
BL01270___fli 149 AAGCCGGAAAAATATACGAAAAAGCGAGCGCTGAACTCGAACAGGTCAGA 198
BSNT_02646 215 ----AAAACGATTGGG--CG-----GCTGAAAAACAGAA--------GCT 245
|||.|||...|| || ||||..|||||||| |||
BL01270___fli 199 CGGCAAATCGAAGAGGAACGGTCAAGCTGGGAAACAGAACGCGAAGCGCT 248
BSNT_02646 246 TATTGAAGAAGCAAAAACCGAGGGCTTTGAACAAGGAGTAGCGTTGGGCA 295
.||.||..|.||.|||...||.||||||.||...|||.|.|....|||.|
BL01270___fli 249 GATAGACCAGGCGAAACAAGAAGGCTTTCAAGCTGGATTTGAAGAGGGAA 298
BSNT_02646 296 AAGCTGAGGCATTGCAACAGTATGCCGAA---CTGATCGGCCAAGCGAAC 342
|.||.||||| ||||| ||.|| |||||
BL01270___fli 299 AGGCCGAGGC--------------CCGAAGCGCTTAT----CAAGC---- 326
BSNT_02646 343 AGTAT----AACTGAA---------AT-GTCCAGAAAAGCTGTTGAG--- 375
|||| | |||| || ||||.| ||.|.| ||
BL01270___fli 327 -GTATTTGGA--TGAAGCCAATGCCATCGTCCGG----GCGGCT-AGACG 368
BSNT_02646 376 -GACAAGCTTGAAGA------CG--CTAAT-----GAAGAAATCGTTGAG 411
|||.| |||||| || | ||| ||||||||.||.||.
BL01270___fli 369 TGACTA---TGAAGAAAAAATCGAAC-AATCATCCGAAGAAATTGTCGAA 414
BSNT_02646 412 CTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAA 461
||||||||..|.||.||.||||||||||||.|.||||||.||||.||.||
BL01270___fli 415 CTTGCCGTGTCACTGGCTAAAAAAGTTTGGAATCAAAAGGCTGACGACAA 464
BSNT_02646 462 AGAGGCTTT------CCTCCTGCTTGTACAACAGGTTATAAACGAAGTGA 505
|||.||||| |||| |||.|||||||..|....|||.|||
BL01270___fli 465 AGAAGCTTTTACAGCCCTC------GTAAAACAGGTGCTGTCGGAAATGA 508
BSNT_02646 506 AGGAATATGACGATATATCAATTTATGTTGATCCATATTACTA---TGAG 552
||||||..||.||.||..|.||.|||||.|||||..|.||||| .|||
BL01270___fli 509 AGGAATTCGATGACATTGCCATCTATGTAGATCCGGAGTACTACACCGAG 558
BSNT_02646 553 ACAATCTTTCA---GCAAAAAGATGAAATCCAGCAGCTTCT-TTATAAAG 598
.|||| .||.|||.|.|||.|..|||||||.|| ..|||
BL01270___fli 559 ------GTTCAAAGCCACAAAAACGAACTTGAGCAGCTCCTCCAATA--- 599
BSNT_02646 599 AATGCCGGC-------TTGGCATATATGCTGATGAAAAAGCTCAAAAAGG 641
|||| |.|..|||||.||.|||||||||||.|..|||||
BL01270___fli 600 -----CGGCGCCCATATCGCGATATACGCCGATGAAAAAGCGCCGAAAGG 644
BSNT_02646 642 AACCTGTTATATTGAAACTCCTTTTGGCAGGGTAGATGCGAGTGTTGACA 691
|||.||.|||.|||||||..||||.||.||..|.|||||..|..|.||||
BL01270___fli 645 AACGTGCTATGTTGAAACGGCTTTCGGAAGAATCGATGCAGGCATCGACA 694
BSNT_02646 692 CACAATTGATGCAATTGAAAGATAAACTTCTGACAGC--GCTGGAA---G 736
|.||||||..|||..|||||.|.|||||.|| |||| |||.||| |
BL01270___fli 695 CTCAATTGCAGCAGCTGAAACAAAAACTGCT--CAGCCTGCTTGAAACGG 742
BSNT_02646 737 CAGGTG----CAGCTGAATGA 753
|||||| |.|.|||
BL01270___fli 743 CAGGTGTTGTCCGGTGA---- 759
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