Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02727 and BL01204
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:29
# Commandline: needle
# -asequence dna-align/BSNT_02727___spoIIIE.1.5803.seq
# -bsequence dna-align/BL01204___spoIIIE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02727___spoIIIE-BL01204___spoIIIE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02727___spoIIIE-BL01204___spoIIIE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02727___spoIIIE
# 2: BL01204___spoIIIE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2429
# Identity: 1796/2429 (73.9%)
# Similarity: 1796/2429 (73.9%)
# Gaps: 148/2429 ( 6.1%)
# Score: 6548.0
#
#
#=======================================
BSNT_02727___ 1 GTGGCAAAGAAAAAACGAAAATCAAGAA------AAAAACAGGCG----A 40
.|||||||.|.||||||||||||||.|| |||||||.| | |
BL01204___spo 1 ATGGCAAAAAGAAAACGAAAATCAACAAAGAAACAAAAACAAG-GAAAAA 49
BSNT_02727___ 41 AACAGCTAAATATAAAATACGAGCTCAACGGATTGCTGTGTATAGCCATT 90
|||.|.|..||.|.||||..||..|..|||||||..|.|||||.|||||.
BL01204___spo 50 AACGGATCCATCTTAAATTTGAATTGTACGGATTAATCTGTATCGCCATC 99
BSNT_02727___ 91 TCAATTATCGCAATCTTGCAGCTGGGGGTAGTCGGGCAAACGTTTATCTA 140
||.|||||.||..|.||||||||.||.||||..|||||||||||.||.||
BL01204___spo 100 TCGATTATTGCGGTTTTGCAGCTTGGCGTAGCAGGGCAAACGTTCATTTA 149
BSNT_02727___ 141 TTTGTTCCGCTTTTTTGCTGGAGAGTGGTTTATTTTATGCTTGTTAGG-- 188
..|||||||||||||.||.||.||.|||||.||..|.|||.|..|.||
BL01204___spo 150 CATGTTCCGCTTTTTCGCCGGTGAATGGTTCATCCTTTGCCTTCTCGGCC 199
BSNT_02727___ 189 ----TTTATTGGTGTTAGGAGTCTCACTGTTTTGGAAGAAAAAAACCCCA 234
||||..||..|| |||| .|.||||||||.||.|||||.||.
BL01204___spo 200 TCTTTTTAACGGGCTT----GTCT--TTATTTTGGAAAAAGAAAACACCC 243
BSNT_02727___ 235 AGCCTTTTAACGAGACGAAAGGCCGGGTTGTACTGTATCATCGCAAGCAT 284
||..||||.|||||..||||.||.||..|.|||||.|||||.||||||||
BL01204___spo 244 AGTTTTTTGACGAGGAGAAAAGCGGGCCTTTACTGCATCATTGCAAGCAT 293
BSNT_02727___ 285 ATTGCTGCTTTCTCACGTGCAGCTATTTAAAAATTTGACGCAC-AAAGGG 333
..||||.|||||.||.||.|||||.|||.|..||||||| | ||||||
BL01204___spo 294 GCTGCTTCTTTCACATGTCCAGCTGTTTCAGCATTTGAC---CGAAAGGG 340
BSNT_02727___ 334 TCTA----TTGAGTCTGCAAGCGTGGTGCGCAATACGTGGGAATTGTTTT 379
.| ||.|||||.|.||||||.|.|..|||||||||||..|||||.
BL01204___spo 341 --GAATGGTTCAGTCTCCGAGCGTGATCCAAAATACGTGGGAGCTGTTTC 388
BSNT_02727___ 380 TAATGGACATGAATGGC-AGCTCTGCTTCACCTGATTTAGGCGGAGGGAT 428
|.|||||..|.||.||| || .|.|..||.||||||.|.||.||.||.||
BL01204___spo 389 TGATGGATGTAAAAGGCGAG-ACAGGATCGCCTGATCTTGGAGGCGGAAT 437
BSNT_02727___ 429 GATCGGTGCGCTGCTGTTTGCGACTTCACACTTTTTGTTTGCGTCGACTG 478
|||.||.||.||..|.||.|||.|.|||.|.|||.|||||||.||..|.|
BL01204___spo 438 GATTGGAGCCCTTTTATTCGCGGCGTCATATTTTCTGTTTGCATCTGCAG 487
BSNT_02727___ 479 GTTCTCAGATCATGGCAATTGTCATGATTTTGATCGGAATGATTTTAGTA 528
|.|||.|.|||||.||..|..||.||||.||||||||..|..||||..|.
BL01204___spo 488 GATCTAAAATCATCGCCGTCTTCCTGATCTTGATCGGCCTTCTTTTGATT 537
BSNT_02727___ 529 ACTGGGCGCTCGCTACAAGAAACGCTAAAAAAGTGGATGAGCCCGATTGG 578
||.|..||.|||||.||.||.|||||.|..||.|||||||.||||.|.|
BL01204___spo 538 ACGGATCGGTCGCTTCAGGAGACGCTGATCAAATGGATGACCCCGGTCG- 586
BSNT_02727___ 579 ACGT--TTTATAAAAGAACAATGGTTAGCATTTATTGATGATATGAAATC 626
|.| ||.||.|||.|.||.|||...||.|||.|.|..|||.|.|||
BL01204___spo 587 -CCTCCTTCATGAAAAACCAGTGGCAGGCCTTTTTAGCAGATCTTAAA-- 633
BSNT_02727___ 627 CTTCAAATCAAATATACAG-TCATCGAAAAAAACGAAAGCGCCGAGCAAA 675
|||.|.|| |.|||| ||..||||||| |||| .||| |.|||
BL01204___spo 634 ---CAATTGAA--AAACAGCTCGCCGAAAAA---GAAA--TCCG-GAAAA 672
BSNT_02727___ 676 AAACAAAAACCGGCCCGCAAAAAACAGCAAATG---GAACCGGAGCCTCC 722
|||||||| |.|.|..|.|||||.|.||.|| ||| ||| ||
BL01204___spo 673 AAACAAAA---GACGCAGAGAAAACCGAAAGTGTCTGAA---GAG---CC 713
BSNT_02727___ 723 TGATGAAGAGGGGGATTATGAAACAGTATCGCCTCTTATTCATTCAGAGC 772
||...||||.|.|||...|||..||| || ||..|||||||.|||||.|
BL01204___spo 714 TGTACAAGAAGCGGACCTTGATCCAG-AT--CCGGTTATTCAATCAGAAC 760
BSNT_02727___ 773 CGATTATCTCAAGCTTTTCTGATCGTAATGAAGAG---GAAGAGTCTCCA 819
|||||||.|||||||||||.||.|||.|||||.|| |||| .||.|
BL01204___spo 761 CGATTATTTCAAGCTTTTCCGACCGTGATGAAAAGCCCGAAG---TTCAA 807
BSNT_02727___ 820 G-TTATAGAAAAGCGCGCCGAACCTGTGTCGAAGCCGCTTCAGGACATCC 868
| ||| ||||.||..|.|| ||..||.|.|.||.|||
BL01204___spo 808 GCTTA-------------CGAAGCTCCGGCG--GCTCCTGCTGAACCTCC 842
BSNT_02727___ 869 -----AACCGGAGACAGGTGATCAGGAAACTGTTTCTGC--TCCTCC--- 908
|.||.||.|..|||| |||||| ||| .|||||
BL01204___spo 843 TGCTGAGCCCGAAATCGGTG---AGGAAA-------TGCAGGCCTCCGGC 882
BSNT_02727___ 909 --------TATGACCTTTACAGAGCTCGAAAATAAGGATTACGAGATGCC 950
.||.||.|||||||||||.|||||.|||||||||.||.|.||
BL01204___spo 883 GCGCCCGAAATCACGTTTACAGAGCTAGAAAACAAGGATTACCAGCTTCC 932
BSNT_02727___ 951 GTCACTGGAT----TTGCTGGCAGATCCGAAGCATACCGGCCAGCAGGCT 996
||| ||| |||||||..|||||||||||.||.||.||||||||.
BL01204___spo 933 GTC----GATTCAATTGCTGGATGATCCGAAGCACACAGGGCAGCAGGCG 978
BSNT_02727___ 997 GATAAAAAGAATATTTATGAAAATGCGAGAAAGCTTGAACGCACATTCCA 1046
|||||||||||||||||.||.|||||.||.|||||.|||.|.||.||.||
BL01204___spo 979 GATAAAAAGAATATTTACGACAATGCCAGGAAGCTGGAAAGGACGTTTCA 1028
BSNT_02727___ 1047 AAGCTTTGGCGTAAAGGCGAAAGTCACACAGGTTCATCTCGGACCGGCCG 1096
||||||.||.||.||||||||||||||.||||||||||||||.|||||||
BL01204___spo 1029 AAGCTTCGGAGTTAAGGCGAAAGTCACCCAGGTTCATCTCGGCCCGGCCG 1078
BSNT_02727___ 1097 TAACAAAATATGAAGTATATCCTGATGTCGGAGTGAAGGTTAGCAAAATT 1146
|.||.|||||||||||.|||||||||||.||.||.||.||.|||||||||
BL01204___spo 1079 TCACGAAATATGAAGTCTATCCTGATGTGGGCGTCAAAGTCAGCAAAATT 1128
BSNT_02727___ 1147 GTCAATTTAAGCGATGATTTAGCGCTTGCGCTTGCTGCGAAGGATATCAG 1196
|||||.|||||.||.||.||.||..|.|||||.||.||.|||||||||.|
BL01204___spo 1129 GTCAACTTAAGTGACGACTTGGCTTTAGCGCTCGCGGCCAAGGATATCCG 1178
BSNT_02727___ 1197 GATCGAAGCGCCTATACCAGGCAAATCAGCAATCGGAATTGAAGTTCCAA 1246
.||||||||.||.||.||.||.|||||.||.||.|||||.|||||.||.|
BL01204___spo 1179 CATCGAAGCCCCGATCCCCGGAAAATCGGCGATTGGAATCGAAGTGCCGA 1228
BSNT_02727___ 1247 ACGCAGAAGTGGCAATGGTTTCGCTGAAAGAAGTGCTGGAGTCTAAATTG 1296
|.||.||||||||.||||||||..|||||||||||||.||.||.|||.||
BL01204___spo 1229 ATGCGGAAGTGGCGATGGTTTCCTTGAAAGAAGTGCTTGAATCGAAACTG 1278
BSNT_02727___ 1297 AATGACAGACCGGATGCGAAGCTGTTAATTGGACTCGGCCGCAATATTTC 1346
||||||.|.||||||||.||||||.|.||.||.||||||||.||.|||||
BL01204___spo 1279 AATGACCGGCCGGATGCAAAGCTGATGATCGGCCTCGGCCGGAACATTTC 1328
BSNT_02727___ 1347 AGGTGAAGCTGTATTGGCTGAGTTAAACAAGATGCCCCACCTTTTGGTCG 1396
.||.|||||.||||||||.|||.|.|||||.||||||||||||.|.||.|
BL01204___spo 1329 CGGAGAAGCGGTATTGGCAGAGCTGAACAAAATGCCCCACCTTCTTGTTG 1378
BSNT_02727___ 1397 CAGGCGCAACCGGTAGCGGGAAAAGTGTCTGTGTCAACGGCATTATTACA 1446
||||.||.|||||.|||||||||||.||||||||||||||.||.||||||
BL01204___spo 1379 CAGGAGCGACCGGAAGCGGGAAAAGCGTCTGTGTCAACGGGATCATTACA 1428
BSNT_02727___ 1447 AGTATTTTAATGCGGGCGAAACCGCATGAAGTGAAAATGATGATGATCGA 1496
||.|||||.|||.||||.||.||.||.||||||||.|||||||||||.||
BL01204___spo 1429 AGCATTTTGATGAGGGCAAAGCCCCACGAAGTGAAGATGATGATGATTGA 1478
BSNT_02727___ 1497 TCCTAAAATGGTAGAGCTAAATGTCTACAACGGGATTCCGCATTTGCTTG 1546
|||.||||||||.|||||.|||||||||||||||||||||||||||||.|
BL01204___spo 1479 TCCGAAAATGGTCGAGCTCAATGTCTACAACGGGATTCCGCATTTGCTCG 1528
BSNT_02727___ 1547 CTCCTGTTGTAACCGATCCGAAAAAAGCGTCGCAGGCTTTGAAAAAGGTT 1596
||||.||.||.||.||.|||||||||||.||||||||||||||.||.||.
BL01204___spo 1529 CTCCCGTCGTGACAGACCCGAAAAAAGCATCGCAGGCTTTGAAGAAAGTC 1578
BSNT_02727___ 1597 GTCAATGAAATGGAGCGGCGGTACGAATTATTTTCTCATACGGGTACAAG 1646
|||||.||||||||||||||.||||||||.||||||||.|||||.||.||
BL01204___spo 1579 GTCAACGAAATGGAGCGGCGCTACGAATTGTTTTCTCACACGGGAACGAG 1628
BSNT_02727___ 1647 AAATATTGAAGGATACAATGATTATATAAATCGCGCCAACAATGA----- 1691
||||||.|||||.||.||.||.|||||.||.|| .||||
BL01204___spo 1629 AAATATCGAAGGGTATAACGACTATATTAAACG-------GATGAATGCC 1671
BSNT_02727___ 1692 --AGAAGGAGCGAAACAGCCAGAGCTGCCTTATATTGTTGTCATTGTGGA 1739
|||||.|||.||.|||||.|||||.||.||.||..||||.||||||||
BL01204___spo 1672 GCAGAAGAAGCAAAGCAGCCGGAGCTTCCATACATCATTGTGATTGTGGA 1721
BSNT_02727___ 1740 CGAGCTTGCCGATCTCATGATGGTCGCTTCATCTGATGTGGAAGATTCGA 1789
||||||||||||.||.||||||||||||||.||||||||.|||||.||||
BL01204___spo 1722 CGAGCTTGCCGACCTGATGATGGTCGCTTCCTCTGATGTTGAAGACTCGA 1771
BSNT_02727___ 1790 TTACGAGATTGTCCCAAATGGCGCGGGCTGCCGGCATCCATCTTATTATT 1839
|.||.||..|.||.||||||||..||||.||.||||||||.||.||.|||
BL01204___spo 1772 TCACAAGGCTTTCGCAAATGGCCAGGGCGGCGGGCATCCACCTGATCATT 1821
BSNT_02727___ 1840 GCGACACAGCGGCCATCGGTGGATGTTATCACAGGGGTGATCAAAGCGAA 1889
|||||.|||.||||.|||||.|||||||||||||||||.||.|||||.||
BL01204___spo 1822 GCGACGCAGAGGCCTTCGGTCGATGTTATCACAGGGGTCATTAAAGCCAA 1871
BSNT_02727___ 1890 CATTCCGTCACGAATCGCGTTCAGCGTATCTTCACAGACGGATTCAAGGA 1939
||||||||||.|.|||||.|||||||||||.||.|||||.||.||.||||
BL01204___spo 1872 CATTCCGTCAAGGATCGCTTTCAGCGTATCGTCTCAGACCGACTCCAGGA 1921
BSNT_02727___ 1940 CCATTCTTGACATGGGTGGCGCTGAGAAGCTTCTTGGCCGCGGCGATATG 1989
|.||||||||.|||||.||||||||.||.|||||.|||.|.||.||.|||
BL01204___spo 1922 CGATTCTTGATATGGGAGGCGCTGAAAAACTTCTCGGCAGAGGGGACATG 1971
BSNT_02727___ 1990 CTGTTTTTACCTGTAGGGGCTAACAAACCTGTCCGTGTGCAGGGAGCATT 2039
||||||.|.|||||.||.||.||.|||||..||||.||.||.||.||.||
BL01204___spo 1972 CTGTTTCTCCCTGTCGGCGCCAATAAACCGCTCCGCGTTCAAGGTGCCTT 2021
BSNT_02727___ 2040 TTTGTCGGATGACGAAGTGGAGAAGGTCGTCGACCATGTGATTACACAGC 2089
|.||||.||.||.|||||.||.||.||.|||||.||.||.||.|..||||
BL01204___spo 2022 TCTGTCAGACGAAGAAGTTGAAAAAGTTGTCGATCACGTCATCAGCCAGC 2071
BSNT_02727___ 2090 AGAAAGCGCAATATCAAGAAGAAATGATTCCTGAGGAGACGACGGAAAC- 2138
|.|||||.|||||.|||||||||||||||||.||.||||||..||||||
BL01204___spo 2072 AAAAAGCCCAATACCAAGAAGAAATGATTCCAGAAGAGACGCAGGAAACG 2121
BSNT_02727___ 2139 -TCATTCCGAGGTTACTGATGAACTTTATGATGAAGCTGTTGAATTAATC 2187
||| .|||.||.||.||.||.||||||||.|||||.||.|.|.|..|.
BL01204___spo 2122 GTCA--GCGAAGTGACAGACGACCTTTATGACGAAGCGGTCGCACTTGTG 2169
BSNT_02727___ 2188 GTCGGCATGCAGACGGCATCTGTTTCAATGCTGCAAAGAAGATTCAGAAT 2237
|||.|||||||||||||.|||||.||.|||||||||||.||||||.|.||
BL01204___spo 2170 GTCAGCATGCAGACGGCTTCTGTATCCATGCTGCAAAGGAGATTCCGCAT 2219
BSNT_02727___ 2238 TGGCTATACGAGAGCGGCGCGCCTGATTGACGCAATGGAGGAACGCGGTG 2287
.||||||||.|||||||||||.||.||.||.||.|||||.||.||.||..
BL01204___spo 2220 CGGCTATACAAGAGCGGCGCGGCTTATCGATGCCATGGAAGAGCGGGGAA 2269
BSNT_02727___ 2288 TTGTCGGACCGTATGAAGG--CAGCAAACCTAGGGAAGTATTATTATCAA 2335
|.|||||.||.|||||||| || |||||..|.|||||..|.||.||||
BL01204___spo 2270 TCGTCGGCCCATATGAAGGATCA--AAACCCCGTGAAGTTCTCTTGTCAA 2317
BSNT_02727___ 2336 AAGAGAAATATGATGAGCTCTCTTCTTAA 2364
|||||.||||.||.||.||||||||||.|
BL01204___spo 2318 AAGAGCAATACGAAGAACTCTCTTCTTGA 2346
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