Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04051 and BL01137

See Amino acid alignment / Visit BSNT_04051 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_04051___yrxA.1.5803.seq
#    -bsequence dna-align/BL01137___nadR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04051___yrxA-BL01137___nadR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04051___yrxA-BL01137___nadR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04051___yrxA
# 2: BL01137___nadR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 582
# Identity:     388/582 (66.7%)
# Similarity:   388/582 (66.7%)
# Gaps:          57/582 ( 9.8%)
# Score: 1231.5
# 
#
#=======================================

BSNT_04051___      1 ---------------------TTGACCGAAGAATTAAAGCTAATGGGCGC     29
                                          |||||.||.|.||||||.||.|.|||.||
BL01137___nad      1 ATGAGAAAGGAGACCATCGGATTGACAGACGGATTAAAACTTACGGGAGC     50

BSNT_04051___     30 CAACAGGCGTGACCAGCTTCTTCTG---TGGCTGAAGGAATCTAAATCAC     76
                     ..|..||||   |||||..||.|||   |||||||||||.||..|..|.|
BL01137___nad     51 TGAGCGGCG---CCAGCAGCTGCTGGCTTGGCTGAAGGAGTCAGAGGCTC     97

BSNT_04051___     77 CGCTGACAGGAGGAGAACTCGCAAAAAAAGCGAAC-GTCTCAAGACAGGT    125
                     ||||.||||||.|.||.||.||.||||.||| |.| ||.|||.|.|||||
BL01137___nad     98 CGCTTACAGGAAGCGAGCTGGCCAAAAGAGC-ATCTGTTTCACGGCAGGT    146

BSNT_04051___    126 TATTGTACAGGATATATCGCTCTTGAAAGCGAAAAATGTACCGATTATCG    175
                     .||.|||||||||||.||..|.||.|||||.|||||.|.||||||.||||
BL01137___nad    147 AATAGTACAGGATATTTCTTTATTAAAAGCAAAAAACGAACCGATCATCG    196

BSNT_04051___    176 CCACAAGCCAAGGATATGTATACATGGAT------GCAGCCGCTCAGC-A    218
                     |.|||||||||||      .||||||.||      .||||| |||.|| |
BL01137___nad    197 CAACAAGCCAAGG------GTACATGTATTTGCGGTCAGCC-CTCGGCAA    239

BSNT_04051___    219 GCACCAGCAGG--CAGAAAGAATCATAGCATGTCTGCACGGTCCTG----    262
                     ..|.||||.||  |||  .|.|||||.||.|||...||||..||.|    
BL01137___nad    240 AAAACAGCCGGTTCAG--CGGATCATCGCCTGTGACCACGAACCCGAAAA    287

BSNT_04051___    263 AACGGACAGAAGAGGAACTGCAGCTCATCGTCGACGAAGGCGTTACAGTA    312
                     |||||| |||||||   |||.|.||.|||||||||...|||||.||.||.
BL01137___nad    288 AACGGA-AGAAGAG---CTGAATCTGATCGTCGACTTTGGCGTAACGGTG    333

BSNT_04051___    313 AAAGACGTAAAAATCGAGCATCCCGTATACGGAGATTTAACTGCAGCCAT    362
                     |||||.||||..||.||.|||||.||.||||||||.|||||.||..|.||
BL01137___nad    334 AAAGATGTAACGATTGAACATCCGGTCTACGGAGACTTAACAGCTTCGAT    383

BSNT_04051___    363 CCAAGTAGGCACCCGGAAAGAAGTTAGC-CATTTCATCAAAAAAATCAAT    411
                     |...||..||||..|.||||||| |.|| .|||||.|||||||||||..|
BL01137___nad    384 CAGGGTCAGCACAAGAAAAGAAG-TCGCGGATTTCGTCAAAAAAATCTCT    432

BSNT_04051___    412 TCTACGAATGCTGCCTACTTATCACAGCTGACCGACGGCGTGCACCTGCA    461
                     ||.||.||.||.||.||..|.||.||||||||..|||||.|.||.||.||
BL01137___nad    433 TCGACAAACGCCGCTTATCTGTCTCAGCTGACAAACGGCATCCATCTCCA    482

BSNT_04051___    462 TACACTGACAGCACCTGATGAACATCGCATCGATCAAGCTTGCCAAGCCC    511
                     .|||.||...|||..|||||||.|....|||||.|||||||||...||||
BL01137___nad    483 CACATTGGAGGCAGATGATGAAGAGAAGATCGAACAAGCTTGCGGCGCCC    532

BSNT_04051___    512 TCGAAGAAGCCGGCATTTTAATTAAAGACTAA    543
                     |..||.||||.|||||..|.|||...||.|||
BL01137___nad    533 TGCAAAAAGCGGGCATCCTCATTCCCGAATAA    564


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