Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01745 and BL01084
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_01745___yhfN.1.5803.seq
# -bsequence dna-align/BL01084___yhfN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01745___yhfN-BL01084___yhfN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01745___yhfN-BL01084___yhfN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01745___yhfN
# 2: BL01084___yhfN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity: 899/1370 (65.6%)
# Similarity: 899/1370 (65.6%)
# Gaps: 202/1370 (14.7%)
# Score: 2894.0
#
#
#=======================================
BSNT_01745___ 1 ATGCGCAAGTGGATTGCGGCAGCAGGACTTGCT----TACGTGCTGTACG 46
|||||.||.|||||.||||.||| |||.|| ||.||||||||||
BL01084___yhf 1 ATGCGGAAATGGATCGCGGGAGC----CTTTCTCCTGTATGTGCTGTACG 46
BSNT_01745___ 47 GGCTGTTTTTTTATTGGTATTTTTTCCTGTCGGGTGATTCCGCAATACCG 96
|.||.|||||.|||||||||.|.||..||.|.|||||..||.|..|.||.
BL01084___yhf 47 GCCTTTTTTTCTATTGGTATCTCTTTATGGCCGGTGAACCCTCCGTTCCC 96
BSNT_01745___ 97 GAAGCCGTGAAAGGGAC--GCAGGCTGATCCGGCTTCTTTCATGAAGCCG 144
||.||..|||||||||| || ||.||.|||||..|.||.||||| ||
BL01084___yhf 97 GAGGCGCTGAAAGGGACAAGC--GCAGACCCGGCGACATTTATGAA--CG 142
BSNT_01745___ 145 -------------TCTGAGTTGGCAGTGGCCGAGCAGTATTCGAATGTCA 181
.|||| |.||..||||.|||||..|.|
BL01084___yhf 143 AAAGGGAACTCATGCTGA-----------CGGAAGAGTACTCGAAAATAA 181
BSNT_01745___ 182 AGAATTTTTTATTTTTTATCGGGGTACCACTTGATTGGTTTCTGTTTT-- 229
||.|.|||.|.|||||||||.||.|.||..||||.|||||..|.||||
BL01084___yhf 182 AGGACTTTCTGTTTTTTATCCGGATTCCGTTTGAGTGGTTCTTATTTTTA 231
BSNT_01745___ 230 ---TTGTTCTGCTTGTCAGCGGTGTTTCAAAGAAAATCAAGAAATGGATC 276
|||| ||.||| .||||.|.||.||||||||.|||||.||| .|
BL01084___yhf 232 ATATTGT--TGATTG---CCGGTTTATCGAAGAAAATGAAGAATTGG-GC 275
BSNT_01745___ 277 GAAGCGGCCGT----GCCTTTTCGGTTTTTGCAGACCGTT---------G 313
|.|||.|.||| || |.|||.||.| |
BL01084___yhf 276 GGAGCAGACGTCAAAGC-------------GGAGAACGATTCAAATAACG 312
BSNT_01745___ 314 GTTTTGTGTTTGTGCTTTCG---CTGATTACAACATTGGTGACGCTGCCT 360
| ..|.|||||.|||||| | |||||....||..|.||..|..||||.
BL01084___yhf 313 G-CATATGTTTTTGCTTT-GTTTCTGATCGTCACGATCGTTTCTTTGCCG 360
BSNT_01745___ 361 TTAGATTGGATAGGCTATCAAGTA-TCGCTTGACTATAACATTTCCACAC 409
.|.||.|||||..|||||||| || |||||||||||...|||.||.||||
BL01084___yhf 361 CTTGACTGGATCAGCTATCAA-TATTCGCTTGACTACGGCATATCAACAC 409
BSNT_01745___ 410 AGACAACGGCCAGCTGGGCTAAGGATCAGGTTATCAGCTTTTGGATCAGC 459
|||||||.||.||||||...||.||.|||||.|||..|||.|||||||||
BL01084___yhf 410 AGACAACCGCGAGCTGGATCAAAGACCAGGTGATCGACTTCTGGATCAGC 459
BSNT_01745___ 460 TTTCCAATCTTTAC-GCTTTGC----GTTCTCGTTTTTTATTGGCTGATC 504
|||||.| |.|| || ||| ||..||||.|||||.|...|||||
BL01084___yhf 460 TTTCCGA---TAACGGC--TGCGGCGGTGATCGTCTTTTACTTTTTGATC 504
BSNT_01745___ 505 AAAAGGCATGAAAAAAAATGGTGGTTATACGCCTGG---CTGTTAACAGT 551
||||.||||||||||...||||||||.||.|||||| ||| ||.||
BL01084___yhf 505 AAAAAGCATGAAAAACGCTGGTGGTTTTATGCCTGGTGCCTG---ACGGT 551
BSNT_01745___ 552 GCCGTTTTCGCTGTTTCTGTTTTTTATTCAGCCGGTCATTATCGATCCTT 601
.|||.||.||||||||.|.|||||..||||||||||..|.||||||||||
BL01084___yhf 552 TCCGGTTACGCTGTTTTTATTTTTCCTTCAGCCGGTTGTCATCGATCCTT 601
BSNT_01745___ 602 TATACAATGATTTTTATCCGCTGAAAAACAAAGAGCTTGAAAGCAAA--A 649
||||||||||.|||||||||||||||||.|||||.||.||| |||| |
BL01084___yhf 602 TATACAATGACTTTTATCCGCTGAAAAATAAAGATCTCGAA--CAAAGCA 649
BSNT_01745___ 650 TTTTAGAGCTGGCAGATGAAGCCAATATTCCGGCTGACCATGTATATGAA 699
||.|..|||||||.|||.|.||..|||||||.||..|.||.||.||||||
BL01084___yhf 650 TTCTGAAGCTGGCCGATCAGGCAGATATTCCTGCGAATCACGTCTATGAA 699
BSNT_01745___ 700 GTGAACATGTCAGAAAAAACAAATGCGCTGAATGCCTATGTTACAGGAAT 749
|||||||||||.||||||||.||||||.|.|||||.|||||.|||||.||
BL01084___yhf 700 GTGAACATGTCTGAAAAAACGAATGCGTTAAATGCTTATGTGACAGGGAT 749
BSNT_01745___ 750 TGGGGCCAATAAACGGATTGTATTGTGGGATACGACGCTGAACAAACTTG 799
.||.|||||||||.|||||||..|.||||||||.|||||||||||.||.|
BL01084___yhf 750 CGGCGCCAATAAAAGGATTGTGCTCTGGGATACCACGCTGAACAAGCTGG 799
BSNT_01745___ 800 ACGATTCAGAAATCCTGTTTATTATGGGCCACGAAATGGGCCATTATGTC 849
|.||..|.|||||..|.||.|||||||..|||||||||||.||.|||||.
BL01084___yhf 800 ATGAGCCGGAAATTTTATTCATTATGGCGCACGAAATGGGGCACTATGTG 849
BSNT_01745___ 850 ATGAAGCACGTTTACATCGGTCT-GGCTGGTTATTTGCTCGTGTCGCTCG 898
||||||||.||||||||.||.|| ||| ||.||..||||..|.||.||.|
BL01084___yhf 850 ATGAAGCATGTTTACATAGGACTCGGC-GGGTACCTGCTTTTATCCCTTG 898
BSNT_01745___ 899 CCGGATTTTATGTCATTGATAAGCTTTACAAGCGGA----CGGTTCGCCT 944
|||..||||||||.||.||.|||||.|||||||||| |||
BL01084___yhf 899 CCGTCTTTTATGTGATCGACAAGCTGTACAAGCGGATCATCGG------- 941
BSNT_01745___ 945 AACCCGCAGCATGTTTCATTTAGAAGGA----CGGCAT------------ 978
|||| |.|.|||..| |.||||
BL01084___yhf 942 ---CCGC-----------TATGGAAAAAGCCTCCGCATTGCGGGAAAATC 977
BSNT_01745___ 979 -GATCTTGCGGCACTTCCGCTGTTAT-----TGCTTTT----GTTTTCTG 1018
||||||||.|||||.|||| ||.| ||||..| ||..|||.
BL01084___yhf 978 CGATCTTGCCGCACTCCCGC--TTCTCCTGATGCTGATGGGGGTCATCTC 1025
BSNT_01745___ 1019 TTTTGAG-CTTTGCGGTGACGCCTTTTTCTAATGCTGTCTCGCGTTATCA 1067
|||.|.| ||| |.||.|||.|.||.||.||.|||.|..||||
BL01084___yhf 1026 TTTCGCGTCTT--------CTCCATTTACAAACGCAGTTTCGAGGCATCA 1067
BSNT_01745___ 1068 GGAGAATAAG--GCTGACCAGTATGGGATCGAGTTGACAGAGAACAGAGA 1115
| |||.||| |||||||||||||.|||.||..||||..|.|||||.||
BL01084___yhf 1068 G--GAAAAAGCCGCTGACCAGTATGCGATTGAACTGACGAACAACAGCGA 1115
BSNT_01745___ 1116 AGCCGCTGTTAAAACGTTTCAGGATTTGGCCGTGA----CGGGGCTGAGC 1161
.||.||.|||...||.|||||.|| ||..|.| |.|||.|||||
BL01084___yhf 1116 TGCAGCGGTTGCGACTTTTCAAGA----GCTCTCAAAAGCCGGGTTGAGC 1161
BSNT_01745___ 1162 CAGGTTGATCCTCCGGTGCTTGTGAAGATTTTCAGAGGCAGCCATCCTTC 1211
.|||...|.||.|||.|.||.||.||||||||.|.|..|.|||||||..|
BL01084___yhf 1162 GAGGCGAACCCGCCGTTTCTCGTCAAGATTTTTAAATACGGCCATCCGAC 1211
BSNT_01745___ 1212 GATCATGGAACGGATTCAACATGCGGAGAAAGAAGAGAATGCGCCGGAAC 1261
.||.|||||||||||||||.|| |..|||.||..|.|..|.|||
BL01084___yhf 1212 CATAATGGAACGGATTCAAAAT------ATTGAACAGTCTTCAACTGAA- 1254
BSNT_01745___ 1262 ATCAGGATGCTGACAAATAA 1281
|||
BL01084___yhf 1255 ----------TGA------- 1257
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