Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05915 and BL00942
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05915___yxlF.1.5803.seq
# -bsequence dna-align/BL00942___yxlF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05915___yxlF-BL00942___yxlF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05915___yxlF-BL00942___yxlF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05915___yxlF
# 2: BL00942___yxlF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 989
# Identity: 591/989 (59.8%)
# Similarity: 591/989 (59.8%)
# Gaps: 202/989 (20.4%)
# Score: 1614.0
#
#
#=======================================
BSNT_05915___ 1 ATGCTGTCTATTGAATCA-----TTATGCAAATCGTA-CAG--GCACCAT 42
|||||||| ..||| |||...|||..||| ||| |||||
BL00942___yxl 1 ATGCTGTC-----CGTCAATGGCTTAACAAAAATGTATCAGCAGCACC-- 43
BSNT_05915___ 43 GAAGCTGTAAAGAATGTCAGTTTTCACGTGAATGAAAATGAG---TGTGT 89
|||||||..|.||||||||.|||.||.| ||||.||.|| ||.||
BL00942___yxl 44 -AAGCTGTCCAAAATGTCAGCTTTGACCT---TGAATATCAGCAATGCGT 89
BSNT_05915___ 90 CGCACTATTAGGACCTAATGGAGCCGGCAAAACCACGACTCTGCAAATGC 139
.||.||..|.||.||.||.|||||.||.|||||.||.||..|||||||||
BL00942___yxl 90 TGCCCTTCTCGGGCCGAACGGAGCGGGAAAAACGACCACATTGCAAATGC 139
BSNT_05915___ 140 TGGCCGGACTGCTTT-----CGCCAACCTCTGGAACCATAAAGCTGTT-- 182
|..|||| ||| |.||.||.||.|||..||| ..|||.||
BL00942___yxl 140 TTTCCGG-----TTTATTGGCCCCTACATCAGGACGCAT-CCGCTTTTTG 183
BSNT_05915___ 183 AGGAGAGAA-----AAA---GCTGGATCGGCGTTTGATTGGGTACCTCCC 224
.|||||||| ||| |||||| .||.||.||..|.||
BL00942___yxl 184 GGGAGAGAATCGATAAACAGGCTGGA---------AATCGGATATTTGCC 224
BSNT_05915___ 225 GCAGTATCCTGCTTTTTATTCGTGGATGACCGCAAATGAATTTTTGACAT 274
.|||.|||||||.||||.|||.||||||||.||....||||.|..|..||
BL00942___yxl 225 TCAGCATCCTGCGTTTTTTTCATGGATGACAGCTTTAGAATATACGGTAT 274
BSNT_05915___ 275 TTGCGGGGAGACTGTCCGGCCTTTCGAAGAGAAAATGCCAAGAGGAAATC 324
|.||.|..||.||.||| |||||| ||.|
BL00942___yxl 275 TCGCTGCAAGGCTTTCC--------------AAAATG---------AAAC 301
BSNT_05915___ 325 G--GTGAGATGCTGGAA---------------------TTTGTCGGTTT- 350
| ||||....|||||| |.|||||||.|
BL00942___yxl 302 GTCGTGAAGCCCTGGAAAAGAGTCGAACCGCTTTGCGCTATGTCGGTCTG 351
BSNT_05915___ 351 -----GCACGAAG--CGGCGCACAAAAGGATCGGGGGCTATTCAGGAGGC 393
|.|.|||| ||| ||| |||||.||.|.|||||||||.
BL00942___yxl 352 GAAAAGGAAGAAGACCGG------AAA--ATCGGCGGTTTTTCAGGAGGG 393
BSNT_05915___ 394 ATGAAACAAAGACTCGGTCTGGCACAGGCACTGCTCCATAAACCGCAGTT 443
|||||.|||||.|||||.|||||.|||||..||.|.|||.|.|.|..|.|
BL00942___yxl 394 ATGAAGCAAAGGCTCGGGCTGGCGCAGGCTTTGGTTCATGAGCAGAGGCT 443
BSNT_05915___ 444 TTTGATATTGGATGAACCGGTGTCTGCTCTTGATCCGACAGGGCGGTTCG 493
.|||||.|||||||||||.||.||.||.||.||||||.|.||||||..||
BL00942___yxl 444 GTTGATTTTGGATGAACCTGTTTCCGCCCTGGATCCGGCGGGGCGGCGCG 493
BSNT_05915___ 494 AGGTGCTGGACATAATGCGGGAGCTGAAAAAGCATATGGCCGTTCTGTTT 543
|.|||||.||.||.|||..|||..|.||||||.|.|||.|..|.||.|||
BL00942___yxl 494 AAGTGCTTGATATGATGAAGGATTTAAAAAAGAAGATGACAATCCTATTT 543
BSNT_05915___ 544 TCTACACATGTTTTGCACGATGCAGAGCAGGTGTGTGATCAAGTGGTGAT 593
||.||.|||||..||||.|||||.||..|||||||.|||||||||.|.||
BL00942___yxl 544 TCGACTCATGTGCTGCATGATGCCGAAGAGGTGTGCGATCAAGTGATCAT 593
BSNT_05915___ 594 TATGAAAAACGGTGAAATTTC--ATGGAAAGG--CGAGTTACAGGAGCTG 639
..|||||.|.||.| .|.|| ||||...|| ||..|.|||| ..||
BL00942___yxl 594 GCTGAAAGAAGGGG--CTGTCAAATGGTCTGGTCCGCTTCACAG--ATTG 639
BSNT_05915___ 640 AAACAACAGCAGCAAACGAA-CGT--TTT------------TACCCTTTC 674
|| ||| ||| ||| ||..||..|
BL00942___yxl 640 AA---------------GAACCGTCATTTAAAGCCATCATATATGCTGAC 674
BSNT_05915___ 675 AG-TGAAAGAGAAG-CTGGAAGGTTGGCTTGAAGAGAAGCCTTACGTCTC 722
|| || |||| ||| ||.|||||.|||||.|||.|...|||||| |.||
BL00942___yxl 675 AGCTG-AAGA-AAGTCTTGAAGGATGGCTGGAACACCTGCCTTA--TGTC 720
BSNT_05915___ 723 AGCTA--TTGTCTATAAGAATCCGTCCCAAGCGG--TTTT-------CGA 761
|||.| |.||.|||.|.||.||.||.|||||.| |||| .||
BL00942___yxl 721 AGCAAAGTCGTGTATCATAAGCCTTCACAAGCTGAATTTTATTTAACAGA 770
BSNT_05915___ 762 GCTGCCTGATATACA--CGC-------TGGCCGGTCATTATT-AAGTGAC 801
.|.|.||| ||| ||| ||||.| .||..|| ||..|||
BL00942___yxl 771 TCGGTCTG----ACAGCCGCCGACTGTTGGCTG--AATGCTTGAACAGAC 814
BSNT_05915___ 802 -TGTATCCGAAAGGGATTGACCGTCACCCGCTTTGAACAGAAAACGGAGT 850
.||||| |||||..||| ||||||||.||||||..||
BL00942___yxl 815 AAGTATC-------GATTGTTCGT-------TTTGAACAAAAAACGATGT 850
BSNT_05915___ 851 CTCTAGAAGACGTCTATCTAAAGGTGGTGCACGC-ATGA 888
|..|.|||||..|.|||||.||||||.|| ..|| ||||
BL00942___yxl 851 CCTTGGAAGATATGTATCTGAAGGTGATG-GGGCTATGA 888
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