Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03540 and BL00811
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_03540___yqjN.1.5803.seq
# -bsequence dna-align/BL00811___yqjN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03540___yqjN-BL00811___yqjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03540___yqjN-BL00811___yqjN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03540___yqjN
# 2: BL00811___yqjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1713
# Identity: 1173/1713 (68.5%)
# Similarity: 1173/1713 (68.5%)
# Gaps: 177/1713 (10.3%)
# Score: 3773.5
#
#
#=======================================
BSNT_03540___ 1 ATGAATTGGCAGACGAAGGACGAATTGCTGGCA---CTTTTAACTTCTCT 47
.||||.||||||||...|||.||| |||..| ||..|.|.||||||
BL00811___yqj 1 GTGAAGTGGCAGACAGTGGAAGAA---CTGAAACGGCTGCTCATTTCTCT 47
BSNT_03540___ 48 TGTGCAATACGAAAGCATCACCGGTTCAAAG--GGCGAGGCAGCACTTGC 95
|||.|||||||||||||||.|.|| ||..| ||.||.|..||.|||||
BL00811___yqj 48 TGTTCAATACGAAAGCATCTCAGG--CACGGCCGGAGAAGTGGCGCTTGC 95
BSNT_03540___ 96 AGAGTATCTTTATTTTATTTTGAAGGACAAGCCCTATTTTCAAAATCACC 145
..|.|||.|..||..|.|.||.||||||....|.||.||||||||..|.|
BL00811___yqj 96 GAAATATATGCATGATGTCTTAAAGGACCGTTCGTACTTTCAAAAGAATC 145
BSNT_03540___ 146 CTGATGATGTAACACTTCATCCGATGGACGATGGCAGATCTTTTCTTACG 195
||||..|..|||..|||||.||||||||.|||||..|.|.||||.|.||.
BL00811___yqj 146 CTGAATACTTAAAGCTTCACCCGATGGAGGATGGGCGCTATTTTTTAACC 195
BSNT_03540___ 196 GCTCTAGTCAAAAAG---AAGAATGTCAAAAAGACAGTGCTTCTGCTGAG 242
||.||.||||||||| ||||| .|| |||.||.|||||.||..||||
BL00811___yqj 196 GCCCTCGTCAAAAAGGAAAAGAA-ATC--AAATACGGTGCTCCTCTTGAG 242
BSNT_03540___ 243 TCATTTTGATGTCGTTGACATAGAAGATTACGGCGAATTTAAACATATGG 292
.||||||||.||.||.||.|..|.|||.|||||.|||||.||||||||||
BL00811___yqj 243 CCATTTTGACGTGGTCGATACGGCAGACTACGGAGAATTCAAACATATGG 292
BSNT_03540___ 293 CTTGCAA--GCCTGCTGAGCT-TTTGAGCTCCTTTTTA--GAGAAAAAAG 337
|.||||| .|| |.||.|| .|.|| |||.||.| ||.|||||||
BL00811___yqj 293 CATGCAAAGTCC--CGGAACTCATGGA---CCTATTAAATGATAAAAAAG 337
BSNT_03540___ 338 AGCTGCTCCCGGAACGGGTGAGAAGAGATGCC--GAAAGCGGAGACTGGC 385
|.||..|.||.||||||||.|.||.||| || ||||||||.||.||||
BL00811___yqj 338 AACTTTTGCCTGAACGGGTCAAAAAAGA--CCTGGAAAGCGGCGAATGGC 385
BSNT_03540___ 386 TGTTCGGAAGAGGGACG-ATGGATATGAAAGCGGGGCTTTGTGTTCAACT 434
|||||||.|| ||||.| |||||||||||||||||.|||..|||||||.|
BL00811___yqj 386 TGTTCGGTAG-GGGAAGCATGGATATGAAAGCGGGTCTTGCTGTTCAATT 434
BSNT_03540___ 435 GTCGATGCTGGAGAGGGCAATGAACGGACATTTTGAGGGCAATCTGCTGT 484
.||.||||||||..||||.|||||||||.|.|||||.||.||.||.||.|
BL00811___yqj 435 TTCTATGCTGGAACGGGCGATGAACGGAGAATTTGACGGAAACCTTCTAT 484
BSNT_03540___ 485 TGATAACGGTTCCGGACGAGGAAGTGAATTC-AAGAGGCATGATTGAAGC 533
|.||.||||||||||||||.|||||.||.|| .|| ||.|||.|||||||
BL00811___yqj 485 TAATTACGGTTCCGGACGAAGAAGTCAACTCGCAG-GGGATGCTTGAAGC 533
BSNT_03540___ 534 GGTTCCTGCATTGAAGGAAATGGAGAAAAAGCAT---GATATCACATTA- 579
.||.||||.|.|||| |..|..||||||||.|| |...| |||||
BL00811___yqj 534 AGTACCTGTACTGAA--AGCTTTAGAAAAAGAATTTGGCCTT--CATTAT 579
BSNT_03540___ 580 ACTGCTTGCCTGAA-TGCCGAACCGATGTTTGAAAAATTTCCCGGCGATC 628
||.||.|||.|.|| || .||.|||||||||||||||..|||.||.||||
BL00811___yqj 580 ACAGCGTGCTTAAACTG-TGAGCCGATGTTTGAAAAACATCCGGGTGATC 628
BSNT_03540___ 629 AGCAGCAATATTTTTATACTGGAAGCATTGGCAAGGTGCTTGCGGGTTTT 678
.|.||||.||..|.|||.|.||.|||||.|||||.|.||||||.||.|||
BL00811___yqj 629 CGAAGCAGTACGTCTATTCAGGCAGCATCGGCAAAGCGCTTGCCGGATTT 678
BSNT_03540___ 679 TTCTGCAAGGGGATTGAGACACATGTTGGAGAGCCGTTTTCAGGCCTAAA 728
||||||||.|||.|||||||.|||||.||.|||||||||.||||..|.||
BL00811___yqj 679 TTCTGCAAAGGGGTTGAGACGCATGTCGGCGAGCCGTTTGCAGGGGTGAA 728
BSNT_03540___ 729 CGCAAATTTAATGGTATCTGAGATTAACCGTTTGCTTGAACTGAATGCTG 778
.||.|||.|||||||.||||||||.|||.|..||||.|||.|.||.|..|
BL00811___yqj 729 TGCGAATCTAATGGTGTCTGAGATCAACAGGCTGCTCGAATTAAACGTCG 778
BSNT_03540___ 779 ATTATTGCGAAAAGGTTGATGGCGAGGTCACTCCGCCGCCGGTAAACTTA 828
|.|||||||||.|.|..||.||.|||||.||.||.||.||||..||..|.
BL00811___yqj 779 ACTATTGCGAAGAAGCGGACGGAGAGGTGACGCCTCCCCCGGCCAATCTG 828
BSNT_03540___ 829 ATGCAAAAGGACTTGAAAGAGGCATATTCAGTCCAGACACCGCATACAGC 878
||||||||.||..||||.|||||.||.||.||.|||||.||.||.|||||
BL00811___yqj 829 ATGCAAAAAGATCTGAAGGAGGCCTACTCGGTTCAGACTCCTCACACAGC 878
BSNT_03540___ 879 --TGTCACATTATTTAATGTGCTGTCAATGAAACGCTCAGCTAGTGAGCT 926
||||.| |.||||||||||||...|||.|.||.||.||....|||||
BL00811___yqj 879 GGTGTCGC--TCTTTAATGTGCTGATGATGCAGCGTTCCGCCGCCGAGCT 926
BSNT_03540___ 927 GCATCAGATGCTGCTTAAAACAGCAGAACAG----GCGGCGGAGGAAAT- 971
.||||..||||||||..|.||||| ||| |||||.|...|.||
BL00811___yqj 927 CCATCGCATGCTGCTCGACACAGC----CAGGGAAGCGGCCGCCAATATT 972
BSNT_03540___ 972 ------CATGTCGAACGTTCGGAAGAAAACACAGGATTTTCAACAATTTG 1015
.||.|||||||| |||||....||.|.|||.|..||||
BL00811___yqj 973 CAAACAAATATCGAACGT-------AAAACGGCCGAATATCAGCGGTTTG 1015
BSNT_03540___ 1016 -AGCCATTTCA-GCCGATTGAGCGGGACGTCACTGTTTTGACATTTGATG 1063
|||| |||| |||.|||.|.|.||.|||..|.||..||||.|||||.|
BL00811___yqj 1016 AAGCC--TTCACGCCAATTAACCCGGCCGTTTCCGTGATGACGTTTGAGG 1063
BSNT_03540___ 1064 AGCTGGTCTCGCGTGCA------------AAAAAGCGTGCGGGGATCTCG 1101
|||| |||.| ||||||| ||||.|.|.||
BL00811___yqj 1064 AGCT--------GTGGAACAAAGCACAGGAAAAAGC---CGGGAAGCCCG 1102
BSNT_03540___ 1102 GAAACAGAGCGG---GC--TCTAAATTATGCCTTTGCTAACAGGGGGGAG 1146
|| |||| || .||.||.|.|||.|||||.||||||||||||
BL00811___yqj 1103 -----AG-GCGGAACGCATCCTCAACTTTGCATTTGCGAACAGGGGGGAG 1146
BSNT_03540___ 1147 CTTGGAGACAGGGATTTTTCGACGAAAATTGTTTCTGAGCTTGCTTCGCT 1196
|||||||||.|.||.|||||.||||||||.||.|||||..|.|||||.||
BL00811___yqj 1147 CTTGGAGACCGCGACTTTTCAACGAAAATCGTCTCTGAATTGGCTTCACT 1196
BSNT_03540___ 1197 TTGTAAGGAGGATGCGCCGCTCATCGTTCTGTTTTATAGTCCGCCGCTTT 1246
.||.||.||.|||||.|||.|.||||||||||||||.|||||||||.|||
BL00811___yqj 1197 CTGCAAAGAAGATGCTCCGATGATCGTTCTGTTTTACAGTCCGCCGTTTT 1246
BSNT_03540___ 1247 ATCCAGCTGTTTCTTCAAAGGATGATCAATTGATCAGAAATACAGCAGAT 1296
||||.|||||||||||||||||.||||...|||||.||| ||..|||
BL00811___yqj 1247 ATCCGGCTGTTTCTTCAAAGGACGATCCTCTGATCCGAA----AGGTGAT 1292
BSNT_03540___ 1297 CAG----TTAAAGCATTATGCGGCTGAGCGATACGGCATTGCA-TTACGG 1341
.|| .|.|||||.||||||||.||..|..||||.||||.| |||| .
BL00811___yqj 1293 GAGAGAAGTGAAGCAGTATGCGGCCGACAGGCACGGAATTGAATTTAC-A 1341
BSNT_03540___ 1342 GAAGTTCAGTACTTCCCTGGACTTTCGGACTTGAGTTATCTTCAGCTGGA 1391
|||||.||.||.|||||.||.||.||.||.||.||.||.||.||||||.|
BL00811___yqj 1342 GAAGTCCAATATTTCCCCGGCCTGTCCGATTTAAGCTACCTGCAGCTGCA 1391
BSNT_03540___ 1392 AAAGCAGGAGGTTGATGCATACACAAGCAATATGCCGCTCTTT-AACAGA 1440
|||.|||...||.|||||.|.||||..||||||||||||.||| |.|| .
BL00811___yqj 1392 AAAACAGTCAGTCGATGCGTTCACATCCAATATGCCGCTTTTTCATCA-C 1440
BSNT_03540___ 1441 GGATATTCATTGCCAA------GCGGTAAAAATCAGGCT-TTATATGTCC 1483
||.||||||.|.|||| ||| ||||..|| || || |||.|
BL00811___yqj 1441 GGCTATTCACTTCCAAAAGGACGCG--AAAACGCA--CTGTT---TGTGC 1483
BSNT_03540___ 1484 CGGTTTTAAATGTCGGTCCGGCTGGTAAAGACCCGCATAAATGGACGGAA 1533
||||..|.|||.||||.|||||.||.|||||.||.||.||||||||||||
BL00811___yqj 1484 CGGTCATCAATATCGGGCCGGCCGGCAAAGATCCTCACAAATGGACGGAA 1533
BSNT_03540___ 1534 AGATTGTATATGCCTTATTCCTTTGAAGTGCTTCCCGATTTGCTTTCATT 1583
.|..|..||.||||.|.|||.||||.|..|||.||.|||
BL00811___yqj 1534 CGTCTCCATGTGCCGTTTTCATTTGGAAAGCTGCCAGAT----------- 1572
BSNT_03540___ 1584 TACGAT-CTCCGCGCTATTAAAGCAAT-CAGAATCTGCCGGCCAGCTGCT 1631
|| ||||| ||| .||.|| || |.||||.||
BL00811___yqj 1573 ----ATCCTCCG-GCT-----CGCGATACA-----------CAAGCTTCT 1601
BSNT_03540___ 1632 GCGGGAAAAATAA 1644
.|||
BL00811___yqj 1602 ---------CTAA 1605
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