Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03532 and BL00802
See
Amino acid alignment /
Visit
BSNT_03532 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_03532___yqjT.1.5803.seq
# -bsequence dna-align/BL00802___yqjT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03532___yqjT-BL00802___yqjT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03532___yqjT-BL00802___yqjT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03532___yqjT
# 2: BL00802___yqjT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 407
# Identity: 275/407 (67.6%)
# Similarity: 275/407 (67.6%)
# Gaps: 43/407 (10.6%)
# Score: 885.0
#
#
#=======================================
BSNT_03532___ 1 ---GTGCATCATATCGAACTGTATGTCTCTGATTTGGAGGCGTCTAGGCG 47
.|.||||||||.||||||||.||.||.||||||||.|||||.|.|||
BL00802___yqj 1 ATGATCCATCATATTGAACTGTACGTTTCAGATTTGGAAGCGTCGAAGCG 50
BSNT_03532___ 48 GTTTTGGGGATGGTTCTTAAAAGAACTTGGCTATAAAGAGTATCAAAAAT 97
.||||||||.|||||..|....||.||.||||||.|.|..|.||||.|||
BL00802___yqj 51 CTTTTGGGGCTGGTTTCTCGGGGAGCTCGGCTATGAGGTTTTTCAACAAT 100
BSNT_03532___ 98 GG---AGCTCAGGCATCAGCTGGAA--GAAAGATCGTTTTTACCTA---- 138
|| .|| |||||||||||||| .|||...|| ||||
BL00802___yqj 101 GGGAAGGC---GGCATCAGCTGGAAAGCAAACGGCG------CCTATCTC 141
BSNT_03532___ 139 GTGATTGTGCAGGCGAAAGAGCCATTTCT-AGAGCCGGAATACCATAGAT 187
|||.||||||||||||||||||..|||.| |.|| |||..||.||.||.|
BL00802___yqj 142 GTGCTTGTGCAGGCGAAAGAGCAGTTTATCAAAG-CGGGTTATCACAGGT 190
BSNT_03532___ 188 GCCGAGTCGGTCTGAACCATCTCGCATTTCATGCTGAATCCAAGCTTCAA 237
||||.|||||..|.||||||||.||.|||.|.||.|.||||||....||.
BL00802___yqj 191 GCCGCGTCGGCTTAAACCATCTTGCTTTTTACGCGGCATCCAAAGAGCAG 240
BSNT_03532___ 238 GTCGATCAGATGACTGAA--AAATTGA-----CGGCAAAAGGTTATCGTG 280
|||||..|.||||| || |||.||| ||| ||.|..||..
BL00802___yqj 241 GTCGACGAAATGAC--AATGAAACTGAGAGAGCGG-----GGATGCCGCA 283
BSNT_03532___ 281 TGTTGTACCGAGAGAGGCATCCTTTTGCCGGAGGAGACGGGCATTATGCA 330
|.||.||...|||.||.|||||.||||||||.|||.|||||||||||||.
BL00802___yqj 284 TTTTATATGAAGACAGACATCCGTTTGCCGGCGGAAACGGGCATTATGCC 333
BSNT_03532___ 331 GTCTATTGTGAGGATCCGGACCGGATTAAGGTAGAGCTCGTTGCCCCAAG 380
.|.|||...||.|||||||||||.||.||.||.||.||.|.||||||
BL00802___yqj 334 TTGTATACCGAAGATCCGGACCGCATCAAAGTTGAACTTGCTGCCCC--- 380
BSNT_03532___ 381 CTGTTAA 387
||.|
BL00802___yqj 381 ---TTGA 384
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.