Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04938 and BL00718
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:07
# Commandline: needle
# -asequence dna-align/BSNT_04938___yvrA.1.5803.seq
# -bsequence dna-align/BL00718___yvrA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04938___yvrA-BL00718___yvrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04938___yvrA-BL00718___yvrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04938___yvrA
# 2: BL00718___yvrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1538
# Identity: 815/1538 (53.0%)
# Similarity: 815/1538 (53.0%)
# Gaps: 460/1538 (29.9%)
# Score: 1890.5
#
#
#=======================================
BSNT_04938___ 1 ATGA-TGAAGGCAGAAGGGCTGTCGGGAGGATACGGCGACAGCCGCCTAA 49
|||| |||.|.||...||| ||||.||.|||||.| ||.|..||..|..
BL00718___yvr 1 ATGATTGATGTCATCCGGG-TGTCCGGCGGATATG--GAAAAACGGATGT 47
BSNT_04938___ 50 TTAACA--ATGTCAGCTTAACCGTGGAGAAGGGAGAATTTCTCGGAATTC 97
.|.||| ||.||||.||..|.||..||..|||.||||||.|.|||||||
BL00718___yvr 48 CTTACAGGATATCAGTTTTGCTGTAAAGCCGGGTGAATTTTTAGGAATTC 97
BSNT_04938___ 98 TCGGCCCTAATGGAAGCGGAAAAACCACGCTTTTGC---ACTTGCTGACA 144
|.||.||.||.||.|||||||||||||| ||||| |..||.||.|.
BL00718___yvr 98 TTGGTCCGAACGGCAGCGGAAAAACCAC---TTTGCTGAAAATGTTGTCG 144
BSNT_04938___ 145 GGTAC-GCTGCCGGCCAAGGAA--GGCAGGGTTTATCTGGCTGGAAAACT 191
||.|| ..||||..|| ||| |||..||| .|| |||.||| |
BL00718___yvr 145 GGAACAATTGCCCCCC---GAAGCGGCGAGGT---GCT-GCTTGAA---T 184
BSNT_04938___ 192 GC-------TGGCGGACTATAAACCGAAGGAACTGG--CGCAAATCATGG 232
|| |.|.|||.||.|||.|||||||.||.| |||||| ||||
BL00718___yvr 185 GCCGTTCAGTCGGGGAGTACAAAACGAAGGAGCTCGCTCGCAAA--ATGG 232
BSNT_04938___ 233 CTGTCCTGCCGCAAAAAACGGATCAAGCCTTCACCTTTACCGTCGAAGAA 282
|.|||||.||.|||||||||||.||.|||||..|||||||.||.||.|||
BL00718___yvr 233 CGGTCCTTCCTCAAAAAACGGAGCAGGCCTTTTCCTTTACGGTGGAGGAA 282
BSNT_04938___ 283 ACTGTAGCCTTTGGCAGATATCCATTCCAAACGGGACTGTTCAGACAGCA 332
||.|||...||||||.|.||..|.|..|||.|.||.||.||..|.||||.
BL00718___yvr 283 ACGGTACAGTTTGGCCGCTACGCGTATCAAGCAGGCCTTTTTCGGCAGCT 332
BSNT_04938___ 333 GACTGAAAAGGATGAAG-CCAT-------TGTACAGGAAGCAATGGAGCA 374
||| ||..|||| |||| ||.|.||| |..|||.||||
BL00718___yvr 333 GAC------GGCGGAAGACCATGATATCGTGAAGAGG--GTGATGAAGCA 374
BSNT_04938___ 375 AACAG----GAGTGGCCGATTTTGCGCAAAAGCCGATTCGCGAACTAAGC 420
.|||| |..|.|| ||.||.|||||..|.||.|..||.||.|||
BL00718___yvr 375 GACAGACACGCTTCGC----TTCGCCCAAAAATCCATCCATGAGCTGAGC 420
BSNT_04938___ 421 GGAGGGGAACAGCAGCGGGTGTATTTGGCACAAGCTTTGGCACAGCAGCC 470
||.||.||.|||||||||||||||||.||.||.||..|.||.|||.|.||
BL00718___yvr 421 GGCGGAGAGCAGCAGCGGGTGTATTTAGCGCAGGCACTTGCCCAGGAACC 470
BSNT_04938___ 471 GCGCATTTTATTT-----TTGGACGAGCCGACTAATTTTCTCGATCTGGC 515
||.| ||||| || ||.||.|||||.|.||||||||||.||.|
BL00718___yvr 471 -CGAA---TATTTGCTGCTT-GATGAACCGACGAGTTTTCTCGATTTGTC 515
BSNT_04938___ 516 TTATCAAAAAGA-CCTGCTTGATCTGATCAAACGCCTGACGAGAGAAAGC 564
.|.|| |||||| .|||||||||.|.||.|||| .||||| |
BL00718___yvr 516 ATTTC-AAAAGAGTCTGCTTGATTTAATGAAAC---------AAGAAA-C 554
BSNT_04938___ 565 GG----------ATTGGCGGCTGTCAGCGTTTTTCATGATCTGAACACCG 604
|| |.|.||.|..|||.|.||.|||||||||.||||.|..|
BL00718___yvr 555 GGCTGCATCCAAACTCGCAGTGGTCGGGGTGTTTCATGATGTGAATATTG 604
BSNT_04938___ 605 CAAGCCTGTACTGTGA---TGAGCTCATGTTTATGAAAA-ACGGTACCGC 650
|.||..|.|||||||| |..|||| .|||.|||| |.||.|
BL00718___yvr 605 CGAGTTTATACTGTGACCGTCTGCTC----CTATTAAAAGATGGAA---- 646
BSNT_04938___ 651 CGGGCCTAAGCAAAA-----------ACCGGAA---------TATGCTGT 680
|||||.|| .|||||| |.|||||
BL00718___yvr 647 -------AAGCAGAAGTTCTTGACCGCCCGGAAGCAGCTCTTTCTGCTG- 688
BSNT_04938___ 681 CACAGAACAAAGCATAAAGGCG----------GTGTACGATACAGATGTC 720
|||| |||||.|||||.||..||
BL00718___yvr 689 ------------------GGCGCATCGGACGAGTGTATGATACGGACATC 720
BSNT_04938___ 721 ACCGCCTTGGTACATCAAAGCTCA----CCTAAACCGATGATTGTGATTC 766
||.|...|||..|||| |||| .|.||.|||..|.||...|||.
BL00718___yvr 721 ACTGGACTGGACCATC----CTCAGCGTTCAAATCCGCAGTTTACAATTA 766
BSNT_04938___ 767 AGCCTGAAAAAGAT--AGCGTGAAGCAGCAGTCTATC------------C 802
.|.| ||||||.|| .|||..||.|.| ||.|..|| |
BL00718___yvr 767 TGGC-GAAAAACATCCCGCGGAAAACCG-AGCCCCTCTTTTTAAAAGAGC 814
BSNT_04938___ 803 CATTTGAAGCA----TTGCTCCAAGCGGGGCGTGATGACATTCTTCTGCA 848
.|.||||| || ||||..|| ||..||..|||| ||..|||
BL00718___yvr 815 GAATTGAA-CAATATTTGCCGCA-------CGGCATCGCATT-TTTGGCA 855
BSNT_04938___ 849 AACGGAAATCCCGCTTCGAACAT-TGTCCTC--CACGCCTATCGGTGCAG 895
.||.| ||||||.|| .|.| ||||||| .| ||
BL00718___yvr 856 GACCG----CCCGCTGCG-GCTTCTGTCCTCAGAA-------------AG 887
BSNT_04938___ 896 GG--TTTTCGTGGAGCAGGACGCTGATCCATAAACGGCTGCCAGATCAGC 943
|| |||.|.|||| |||| |||
BL00718___yvr 888 GGGCTTTGCTTGGA----GACG---------AAA---------------- 908
BSNT_04938___ 944 CAGATCCGATAGAAGGACTTACGGCCTGTCTTTCAGAAAGCGGTTTTCAA 993
||||| |||..||.|||||...| ||
BL00718___yvr 909 ----------------ACTTA---------TTTTCGACAGCGGAAAT-AA 932
BSNT_04938___ 994 CTGCAGGAGACGTGTGCG-ATGGCTTCTTCAGAAAGAC--TTGACCA--- 1037
|| |.||| ||..|| ||||| ||.|||| | ||||.||
BL00718___yvr 933 CT-CTGGA----TGGCCGCATGGC-TCGTCAG-----CTTTTGAACAGGA 971
BSNT_04938___ 1038 -----TTTCGTGTATCGAACAT----ATGAA------------------- 1059
| ||.||||.||||| .||||
BL00718___yvr 972 AACGCT---GTTTATCCAACATGATGCTGAATTGGCTGACTGCCATATTG 1018
BSNT_04938___ 1060 -GACGGAGA---GTTATCCGTTTTCATATGCGTTC--------AGAC--- 1094
|.||||.| ||.||| |||.||| || || ||||
BL00718___yvr 1019 TGTCGGAAAGCGGTGATC--TTTGCAT---CG-TCGGTATGAAAGACACG 1062
BSNT_04938___ 1095 ---CGGCTTTTCG---ATTTGGATTTTGATTAACGGC--TATGC-GGCAG 1135
.|||.||| | ||.|||.|.||..||.||||| |.||| ||..|
BL00718___yvr 1063 ATGGGGCGTTT-GATCATGTGGGTGTTAGTTGACGGCTGTTTGCAGGATG 1111
BSNT_04938___ 1136 ATCAATTCTTCATCAAGGCTCTTATGGCTGCCGAAGCAGAACGGACGA-A 1184
.||||||..| ||| |.||| |
BL00718___yvr 1112 GTCAATTTGT----------------------------GAA--GGCGATA 1131
BSNT_04938___ 1185 AGTGCTGGGAGACGGAA------GAGGCACAG----------------GT 1212
||.|||| |||.| |..||.||| ||
BL00718___yvr 1132 AGCGCTG-----CGGCATTTGCCGCAGCCCAGCATCATGTTCCGTGTAGT 1176
BSNT_04938___ 1213 GATATTCTCATCGCCGCGACTCAAAC-------TCAGC-AATCCGAAAAC 1254
|||.|.||..|.||.||.||||||.| ||||| .||| |||
BL00718___yvr 1177 GATGTCCTTGTAGCGGCCACTCAATCCGGCCGGTCAGCGGATC---AAA- 1222
BSNT_04938___ 1255 ATAGAACAGCGGC-----TGA-ACCAATTGATAAAGAAAGGGACAGCTGA 1298
|.|| ||| ||.||||.| |||.||| |||||.|.
BL00718___yvr 1223 ---------CCGCTTTTTTGACACAAATTCA-AAATAAA---ACAGCCGC 1259
BSNT_04938___ 1299 ATGTATAAAAGAGGCTGCTGAGTTGTTT----GAATAA 1332
.|||.|.|||| .||| ||.|||
BL00718___yvr 1260 TTGTGTGAAAG-------------CTTTAAAAGATTAA 1284
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