Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03276 and BL00669
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_03276___ypdP.1.5803.seq
# -bsequence dna-align/BL00669___ypdP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03276___ypdP-BL00669___ypdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03276___ypdP-BL00669___ypdP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03276___ypdP
# 2: BL00669___ypdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 725
# Identity: 509/725 (70.2%)
# Similarity: 509/725 (70.2%)
# Gaps: 58/725 ( 8.0%)
# Score: 1748.5
#
#
#=======================================
BSNT_03276___ 1 TTGTTTAA--TAATTCGTTTTGGATCTTTTTTGCGATCATTCATTTTATC 48
|||||||| .||| .||.|||||...|||||||||||||.||||||||
BL00669___ypd 1 TTGTTTAACGAAAT--ATTATGGATTAGTTTTGCGATCATTAATTTTATC 48
BSNT_03276___ 49 ATTGTTCTTTTATTTTATAAAGGATTTGGCAAAATGGGGCTGTTTGTTTG 98
||||||||.||.||||.||||.||||||||||.|..||..|.|||||.||
BL00669___ypd 49 ATTGTTCTCTTCTTTTTTAAACGATTTGGCAAGACCGGTTTATTTGTCTG 98
BSNT_03276___ 99 GATCGGTTTTGCGACAGTCTGCGCCAACCTCCAAGTCGTCAAAACAGTGG 148
|||||||||||||||||.|..||||||..||.|.||.||||||||.||.|
BL00669___ypd 99 GATCGGTTTTGCGACAGCCGCCGCCAATATCGAGGTAGTCAAAACGGTCG 148
BSNT_03276___ 149 AACTGTTTGGCTTAACAGCGACACTCGGGAATGTGATGTATGGCACAATC 198
|.|||||.||.||.||.|||||.|||||.||..|..||||.||.|...|.
BL00669___ypd 149 AGCTGTTCGGTTTGACTGCGACGCTCGGCAACATCCTGTACGGAAGCGTG 198
BSNT_03276___ 199 TTTTTTGCGACAGATGTGCTGAATGAAAAATACGGACCAGCTGAAGCCAG 248
|||||||||||.||.||..|.|||||||.|||||||...|..|||||.|.
BL00669___ypd 199 TTTTTTGCGACCGACGTCATCAATGAAAGATACGGAAAGGAAGAAGCGAA 248
BSNT_03276___ 249 AAAAGCGGTATGGCTCGG-------ATTCTCA--ACGCTCCTGACGCTGA 289
||||||.||.|...|||| |||||.| || |.||||||
BL00669___ypd 249 AAAAGCCGTTTCAATCGGTTTTTTCATTCTGATTAC---CTTGACGC--- 292
BSNT_03276___ 290 CATTTGTCATGCAGGGCGTGCTGCTTTTCGAACCGGCTTCCAG-CGACAT 338
|.|||||||||||.|.|||.||.||| ||.|.||.|||.| .|||||
BL00669___ypd 293 ---TCGTCATGCAGGGAGCGCTCCTATTC-AAGCCGCATCCCGAAGACAT 338
BSNT_03276___ 339 ATCACAAACAGCGCTGGAAACGATCTTCGGATTCCTTCCGCGAGTTGCGT 388
..||||..|.||||||||.|||||.|||||.|||.|.||.||.||.||..
BL00669___ypd 339 CGCACAGCCTGCGCTGGAGACGATATTCGGCTTCTTGCCCCGCGTGGCCC 388
BSNT_03276___ 389 TAGGAAGTCTGCTTGCCTTTATCTTCAGCCAAACGCTGGATGTTTATGTA 438
|.||.||.|||||.||||.||||.|||||||||||||.||||||||||||
BL00669___ypd 389 TCGGCAGCCTGCTCGCCTATATCATCAGCCAAACGCTTGATGTTTATGTA 438
BSNT_03276___ 439 TATTCGGCAATTAGAAGGATATTTCCTTCTGATCGGCTTTTATGGCTCAG 488
|||||||.|||.||||||.||||||||||.||.|||....|.|||||..|
BL00669___ypd 439 TATTCGGGAATCAGAAGGTTATTTCCTTCCGACCGGGCACTGTGGCTTCG 488
BSNT_03276___ 489 AAACGGCGGCAGTACAGCAGTCAGCCAGCTGTTTGATACATTCATATTCA 538
.|||.|||||||||||||..|.|||||||||.|||||||.||.||.||.|
BL00669___ypd 489 CAACAGCGGCAGTACAGCCTTAAGCCAGCTGCTTGATACGTTGATTTTTA 538
BSNT_03276___ 539 CTTCAGTCGCCTTTCTCGGCATTTATCCGGCAGG-CGTGTGGCTTCATAT 587
|....|||||.|||.|.|||..|||||| ||.|| .||.|||.||||.||
BL00669___ypd 539 CGAGCGTCGCGTTTATGGGCGCTTATCC-GCTGGATGTATGGATTCAGAT 587
BSNT_03276___ 588 TTTTATTTCTACATA---TTTGATTAAGT-----TTGCGGTATCTTTGAT 629
||||||..|.||||| .|||| ||.| |.||.|||| |
BL00669___ypd 588 TTTTATCACGACATACGTCTTGA--AATTCGTTGTAGCCGTAT------T 629
BSNT_03276___ 630 TTCATTGCCTTATGCTTATGCAGCCAAAAAAATGATACCTAAAGATGAAA 679
..||..|||.||.||||||||.||.||||..||.|..|||...|||||||
BL00669___ypd 630 CGCAGCGCCGTACGCTTATGCCGCTAAAAGGATCACCCCTTTGGATGAAA 679
BSNT_03276___ 680 GGAGTTCATAA-------------- 690
|||| |..||
BL00669___ypd 680 GGAG--CGAAAACAATGCCGGTTGA 702
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