Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04175 and BL00302
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_04175___rnhC.1.5803.seq
# -bsequence dna-align/BL00302___rnhC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04175___rnhC-BL00302___rnhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04175___rnhC-BL00302___rnhC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04175___rnhC
# 2: BL00302___rnhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1005
# Identity: 682/1005 (67.9%)
# Similarity: 682/1005 (67.9%)
# Gaps: 129/1005 (12.8%)
# Score: 2305.0
#
#
#=======================================
BSNT_04175___ 1 GTGTCCCATTCAGTGATAAAAGTATCGTTGTCTGCTATTGACCAAATGAA 50
|||||.|||||.||..|||||||..|...|||||.||||||.|..|||.|
BL00302___rnh 1 GTGTCACATTCTGTTTTAAAAGTTCCCCCGTCTGTTATTGAACGGATGCA 50
BSNT_04175___ 51 AA-------------TGACA-TACAGCGGTTCGCTTACAGCCTCTGTTCC 86
|| ||||| ||| |||.|| ||||
BL00302___rnh 51 AAGCCACTACGGGCCTGACATTAC-----TTCACT-----------TTCC 84
BSNT_04175___ 87 G--CAGGGAGCCGTTTTTCAGGCGAAACCGCCCGGCTGTACCATTACAGC 134
| |||||.||.|||||.||.||.|||||.|..||.||.|||||||||||
BL00302___rnh 85 GTACAGGGCGCAGTTTTCCAAGCCAAACCCCAAGGGTGCACCATTACAGC 134
BSNT_04175___ 135 ATATAAATCAGGCAAGGTCTTGTTTCAAGGCAAAAACGCAGCGGCA---G 181
|||....||.||.|||||..||||.|||||.|||||| ||||.| |
BL00302___rnh 135 ATACCGGTCGGGGAAGGTGCTGTTCCAAGGAAAAAAC---GCGGAAAAGG 181
BSNT_04175___ 182 AATCCGCGCGCTGGGGAACAGCAGAGCCGGAAAAGAAGAAAATGG---CC 228
||.|.|.||||||| ||.||.||..|.||| |.|..|| ||
BL00302___rnh 182 AAGCGGAGCGCTGG---ACGGCGGATGCTGAA------ACACCGGCTCCC 222
BSNT_04175___ 229 AAAAAGCCGGCTGATC------------CCCG-----CTATGCCCCTCCG 261
||||||||.|| ||| |||| ||||...||.||.
BL00302___rnh 223 AAAAAGCCCGC--ATCGAAAAAAAGCATCCCGTCCGTCTATCAGCCGCCT 270
BSNT_04175___ 262 GCAGATATCG---CCGGAATGTCTGTTATCGGTTCTGACGAAGTCGGAAC 308
|.||..|||| || ||||||||.|||||.||.||.||||||||.||
BL00302___rnh 271 GAAGGCATCGGTTCC---ATGTCTGTGATCGGCTCCGATGAAGTCGGGAC 317
BSNT_04175___ 309 CGGAGATTACTTTGGCCCAATGACGGTTGTATGCGCGTACGTCGACAAAA 358
.||.|||||.||.|||||.||.||.||.|..||||..||||..|||||..
BL00302___rnh 318 AGGCGATTATTTCGGCCCGATCACCGTCGCGTGCGTATACGCTGACAAGG 367
BSNT_04175___ 359 CCATGCTTCCTTTAATGAAGGAACTCGGTGTTAAGGATTCTAAAGATTTA 408
|.|.||||||..|..|.||.||||||||||||||.||.||.|||.|.|||
BL00302___rnh 368 CGAAGCTTCCGCTGTTAAAAGAACTCGGTGTTAAAGACTCGAAAAACTTA 417
BSNT_04175___ 409 AAAGATCCGCAAATCATCGAGATTGCCCGAAACCTGATCAAAACCATTCC 458
|||||||||||||||.|..||||.||.||..||.|.|||||.||..|.||
BL00302___rnh 418 AAAGATCCGCAAATCGTTCAGATCGCGCGCGACTTAATCAAGACAGTCCC 467
BSNT_04175___ 459 ATATAGCCTGCTGGTTTTAAAAAATGAAAAGTATAACAGCATGCAGGAAA 508
.||.||||||||.|||||||.|||.|||||||||||....||||||||||
BL00302___rnh 468 TTACAGCCTGCTCGTTTTAAGAAACGAAAAGTATAATGAAATGCAGGAAA 517
BSNT_04175___ 509 AAGGCATGAGCCAAGGGAAAATGAAAGCTTTGCTGCACAATCAGGCGATC 558
||||.|||||||||||.||||||||||||.|.||.|||||.|||||||||
BL00302___rnh 518 AAGGGATGAGCCAAGGAAAAATGAAAGCTCTTCTCCACAACCAGGCGATC 567
BSNT_04175___ 559 ----ACCCATTTATTAAGAAAATTGGATGGAGTAAA----GCCTGAAGCC 600
||| ||.|.|| |||||||||.|| || |||||||||.
BL00302___rnh 568 GGCAACC---TTCTCAA-AAAATTGGACGG----AACCCGGCCTGAAGCG 609
BSNT_04175___ 601 ATTTTGATTGACCAATTCGCTGAGCCAGGCGTCTACTTCAATCATTTAAA 650
|||||.||.|||||.|||||.||.||.|.|||.||||||||.|||.|
BL00302___rnh 610 ATTTTAATCGACCAGTTCGCCGAACCGGCCGTATACTTCAAGCATCT--- 656
BSNT_04175___ 651 GGGCAG----AGACATTGTGAAGGAGCGGACCTATTTTAGCACAAAAGCT 696
||||| |..|...||.||.||.||.||.|||||.|||||||||||.
BL00302___rnh 657 -GGCAGGCAAAACCGCCGTCAAAGAACGTACATATTTCAGCACAAAAGCG 705
BSNT_04175___ 697 GAAGGTATTCACCTGGCTGTCGCCGCTGCTTCAATCATTGCAAGATATTC 746
|||||.||.||.||..|.||.||.||.||.||.|||||||||.|.|||||
BL00302___rnh 706 GAAGGCATCCATCTTTCAGTTGCAGCAGCCTCGATCATTGCACGCTATTC 755
BSNT_04175___ 747 GTTTTTAATGGAAATGGATAAACTATCACGCGAGGCAGGAATGACGCTTC 796
.||||||||||||||||||||.||.|||....|.||.||.||.|||||||
BL00302___rnh 756 ATTTTTAATGGAAATGGATAAGCTGTCAAAACAAGCCGGCATTACGCTTC 805
BSNT_04175___ 797 CAAAAGGGGCCGGTCCTCACGTCGATGAAGCGGCCGCCAAGCTGATCCTC 846
|.|||||.||.||.||.|.||||||||||||.|.|||||||||||||...
BL00302___rnh 806 CGAAAGGAGCGGGCCCGCTCGTCGATGAAGCCGGCGCCAAGCTGATCAAG 855
BSNT_04175___ 847 AAA------AAAGGGGCATCTGC----ACTCAGAACCTTTACAAAACTCC 886
||| .|||..|||| ||| | ||.|||||.||.|
BL00302___rnh 856 AAACACGGCGAAGACGCAT-TGCGGGTA---------TTCACAAAGCTGC 895
BSNT_04175___ 887 ATTTCGCCAATACGCAAAAAGCGCAGCGCCTTGC--TGATAAAAAACGTT 934
||||.|||||||||||.||.|||.||||..|||| .| |||||.|
BL00302___rnh 896 ATTTTGCCAATACGCAGAAGGCGAAGCGGATTGCGTCG-----AAACGGT 940
BSNT_04175___ 935 CATAG 939
.|
BL00302___rnh 941 AA--- 942
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