Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06043 and BL00227
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_06043___pdp.1.5803.seq
# -bsequence dna-align/BL00227___pdp.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06043___pdp-BL00227___pdp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06043___pdp-BL00227___pdp.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06043___pdp
# 2: BL00227___pdp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1311
# Identity: 1055/1311 (80.5%)
# Similarity: 1055/1311 (80.5%)
# Gaps: 18/1311 ( 1.4%)
# Score: 4228.5
#
#
#=======================================
BSNT_06043___ 1 ATGAGAATGGTAGATATCATCATCAAAAAACAAAACGGAAAAGAACTCAC 50
|||||||||||.||||||||||..|||||||||||.|||.|||||.|.||
BL00227___pdp 1 ATGAGAATGGTTGATATCATCACAAAAAAACAAAATGGAGAAGAATTGAC 50
BSNT_06043___ 51 CACTGAAGAAATTCAATTTTTCGTGAACGGCTACACAGACGGAAGCATTC 100
.||.||||||||||||||||||.|.||.||||||||.|||||.|||||||
BL00227___pdp 51 AACAGAAGAAATTCAATTTTTCATTAAAGGCTACACCGACGGCAGCATTC 100
BSNT_06043___ 101 CTGATTATCAGGCAAGCGCGCTTGCTATGGCGATTTTCTTCCAGGATATG 150
||||.|||||.||.|||||.||.||.|||||.||.|..||.|||||.|||
BL00227___pdp 101 CTGACTATCAAGCGAGCGCTCTGGCGATGGCCATCTATTTTCAGGACATG 150
BSNT_06043___ 151 AGTGACCGTGAACGCGCGGACTTGACGATGGCTATGGTGAACTCCGGTGA 200
|..|||.|.||.||.||.||..|.||||||||.|||||.|||||.||.||
BL00227___pdp 151 ACGGACAGAGAGCGGGCCGATCTCACGATGGCGATGGTCAACTCAGGCGA 200
BSNT_06043___ 201 AACGATTGATCTTTCTGCCATTGAAGGAATTAAAGTGGATAAACACTCCA 250
||||||.||.|||||.||.||||||||.||.||.||.||.||||||||.|
BL00227___pdp 201 AACGATCGACCTTTCCGCGATTGAAGGTATCAAGGTCGACAAACACTCAA 250
BSNT_06043___ 251 CCGGCGGCGTCGGCGACACGACAACGCTCGTTCTCGCCCCGCTTGTTGCG 300
|.||.|||||||||||||||||.||||||||.||.||.||||||||.|||
BL00227___pdp 251 CAGGAGGCGTCGGCGACACGACGACGCTCGTACTTGCACCGCTTGTCGCG 300
BSNT_06043___ 301 GCTCTTGATGTGCCGGTTGCCAAAATGTCCGGCCGCGGCCTCGGCCATAC 350
|||||.||.||.||.||.|||||||||||.||.|||||||||||.||.||
BL00227___pdp 301 GCTCTCGACGTACCCGTCGCCAAAATGTCGGGACGCGGCCTCGGACACAC 350
BSNT_06043___ 351 GGGCGGCACGATTGATAAGTTAGAGGCAATCGACGGCTTCCACGTGGAAC 400
.||.||.||.|||||.|||.|.||.||.|||.|.||.||.||||||||||
BL00227___pdp 351 AGGGGGAACAATTGACAAGCTCGAAGCGATCAAAGGGTTTCACGTGGAAC 400
BSNT_06043___ 401 TGACGAAGGATGAATTTATTAAACTTGTGAACCGCGACAAGGTTGCGGTC 450
|..|.||.||||||||.||..|.||.||.||||||||||||||.||.||.
BL00227___pdp 401 TTTCCAAAGATGAATTCATCGAGCTCGTCAACCGCGACAAGGTCGCCGTT 450
BSNT_06043___ 451 ATCGGCCAAAGCGGCAATTTAACGCCGGCTGATAAAAAACTGTACGCGCT 500
||||||||||||||.||.||.|||||.|||||.||||||||||||||.||
BL00227___pdp 451 ATCGGCCAAAGCGGAAACTTGACGCCTGCTGACAAAAAACTGTACGCCCT 500
BSNT_06043___ 501 TCGTGATGTAACGGGAACGGTCAATTCCATTCCGCTCATTGCAAGCTCGA 550
|||.|||||.||.||.|||||||||||.||.|||||.|||||.|||||||
BL00227___pdp 501 TCGCGATGTGACAGGCACGGTCAATTCGATCCCGCTGATTGCCAGCTCGA 550
BSNT_06043___ 551 TTATGAGCAAAAAAATCGCTGCCGGGGCGGACGCCATCGTGCTTGACGTA 600
|.||||||||.||||||||.||.||||||||.||.||.||.||||||||.
BL00227___pdp 551 TCATGAGCAAGAAAATCGCCGCAGGGGCGGATGCGATTGTCCTTGACGTC 600
BSNT_06043___ 601 AAAACGGGAGCGGGCGCCTTCATGAAAACAGAAGAAGACGCAGCTGAA-C 649
||||||||.||.|||||.||.||||||||.||.|||||.|||| |.|| |
BL00227___pdp 601 AAAACGGGCGCCGGCGCATTTATGAAAACCGATGAAGATGCAG-TCAACC 649
BSNT_06043___ 650 TTGCCAAAGCGATGGTACGCATCGGAAATAACGTCGGCCGTCAAACAATG 699
||||.|||||.|||||.|||||||||||.||.||||||||.|||||.|||
BL00227___pdp 650 TTGCAAAAGCAATGGTCCGCATCGGAAACAATGTCGGCCGCCAAACGATG 699
BSNT_06043___ 700 GCTGTCATTTCAGACATGTCCCAGCCGCTCGGCTTTGCGATCGGAAATGC 749
||.|||||.||.|||||||||||||||||.||.|||||.|||||||||||
BL00227___pdp 700 GCCGTCATCTCCGACATGTCCCAGCCGCTGGGGTTTGCCATCGGAAATGC 749
BSNT_06043___ 750 GCTTGAAGTCAAAGAAGCGATCGACACACTCAAAGGCGAGGGACCTGAGG 799
|||||||||.|||||.|||||.||.|||.|.||||||||.||.|||||.|
BL00227___pdp 750 GCTTGAAGTGAAAGAGGCGATTGATACATTAAAAGGCGAAGGTCCTGAAG 799
BSNT_06043___ 800 ATCTTCA-TGAACTTGTCTTAACGCTCGGCAGCCAGATGGTTGTGCTTGC 848
| |||.| |||.|||||||||||..|.||||||||.|||||.||.||.||
BL00227___pdp 800 A-CTTGACTGAGCTTGTCTTAACATTGGGCAGCCAAATGGTCGTTCTCGC 848
BSNT_06043___ 849 GAAAAAAGCCGATACATTGGACGAAGCGAGAGCGAAGCTGGAAGAAGTCA 898
.||||||||.||.||..|.||||||||.||||.|||.|||...||.||.|
BL00227___pdp 849 CAAAAAAGCGGAGACCCTTGACGAAGCAAGAGAGAAACTGATCGACGTGA 898
BSNT_06043___ 899 TGAAAAACGGCAAGGCACTTGAGAAATTCAAGGATTTCCTGAAAAACCAA 948
||||||||||.||.||.||..|.||||||||.||.||||||.|.||.|||
BL00227___pdp 899 TGAAAAACGGAAAAGCGCTGCAAAAATTCAAAGACTTCCTGCAGAATCAA 948
BSNT_06043___ 949 GGCGGCGACAGCTCGATTGTTGACGAT---CCGTCTAAGCTTCCGCAAGC 995
|||||||||||||| |||.|..||| ||....|||||.||.||.||
BL00227___pdp 949 GGCGGCGACAGCTC---TGTCGCGGATAACCCAGAAAAGCTGCCTCAGGC 995
BSNT_06043___ 996 CGCATATCAAATTGATGTGCCTGCCAAAGAAGCGGGTGTCGTCTCTGAAA 1045
.||.|||.||||.||.||.|||||||||||||||||||||||.|||||||
BL00227___pdp 996 TGCCTATAAAATCGACGTTCCTGCCAAAGAAGCGGGTGTCGTGTCTGAAA 1045
BSNT_06043___ 1046 TCGTTGCGGATGAAATCGGTGTCGCGGCGATGCTGTTAGGTGCCGGCCGC 1095
||||.||.|||.|||||||.||.|||||.||||||.|.||.|||||||||
BL00227___pdp 1046 TCGTCGCCGATCAAATCGGCGTTGCGGCCATGCTGCTGGGCGCCGGCCGC 1095
BSNT_06043___ 1096 GCCACAAAAGAAGATGAGATCGATTTAGCCGTCGGCATCATGCTCCGCAA 1145
||.|||||||||||..|.|||||..|.|||||||||||||||||||||||
BL00227___pdp 1096 GCAACAAAAGAAGACAAAATCGACCTCGCCGTCGGCATCATGCTCCGCAA 1145
BSNT_06043___ 1146 AAAGGTCGGCGACAAAGTAGAAAAAGGCGAACCGCTCGTGACGCTTTACG 1195
|||.|||||||||..|||.||||||||||||||..|.||.||.||.||||
BL00227___pdp 1146 AAAAGTCGGCGACGCAGTCGAAAAAGGCGAACCATTGGTTACCCTATACG 1195
BSNT_06043___ 1196 CCAACCGCGAAAACGTTGATGAAGTCATCGCAAAAGTCTATGACAACATC 1245
|.|||||||||||.||.|||||.|||||||||||||||||.|||||||||
BL00227___pdp 1196 CAAACCGCGAAAATGTCGATGACGTCATCGCAAAAGTCTACGACAACATC 1245
BSNT_06043___ 1246 CGCATCGCCGCGGAA----GCGAAGGCGCCGAAGCTGATTCATACGTTAA 1291
|..|| ||||||| .|||| ||.||||||||..|.||||||.|.|
BL00227___pdp 1246 CAAAT---CGCGGAAACAGCCGAA-GCACCGAAGCTTGTGCATACGGTGA 1291
BSNT_06043___ 1292 TTACAGAATAA 1302
||||.|||||.
BL00227___pdp 1292 TTACGGAATAG 1302
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